PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_009603
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 462aa    MW: 51518.4 Da    PI: 4.4935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_009603genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.37.4e-50171432128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                  ppGfrFhPtdeelvv+yLk+k+ +++l+  ++i+e+d+yk++P +Lp  +k+k+++++w+f s+rd+ky++g r++rat+ gyWkatgkd+++ + ++
  DCAR_009603  17 PPGFRFHPTDEELVVYYLKRKICRRRLKP-DMIAETDVYKWDPDELPglSKLKTGDRQWFFLSPRDRKYPNGGRSSRATTCGYWKATGKDRTISC-NS 112
                  9*************************999.99***************6559999*****************************************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  + vglkktLv+ykgrap ge+tdWvmhey+l
  DCAR_009603 113 RSVGLKKTLVYYKGRAPAGERTDWVMHEYTL 143
                  9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5814166IPR003441NAC domain
PROSITE profilePS5100554.81316166IPR003441NAC domain
PfamPF023657.0E-2717143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGAERSPKSS SDSKLFPPGF RFHPTDEELV VYYLKRKICR RRLKPDMIAE TDVYKWDPDE  60
LPGLSKLKTG DRQWFFLSPR DRKYPNGGRS SRATTCGYWK ATGKDRTISC NSRSVGLKKT  120
LVYYKGRAPA GERTDWVMHE YTLDEEELKR CPSAQDYYVL YKVFKKSGPG PKNGEQYGAP  180
FKEEDWADDD CVSFNGFLEQ ENIVKDVDVS PINNNIASSM PQDQDDIDEF LKKIADDPVF  240
TDEAGFVQPL AIDYCYTFDE VIAEKENGHI LGNHCSGEVG LPDQSMVPHH NEHLNVQASF  300
VQPQPFKSQL PVEAPEWAAS ATKTCEQGLG GILFEDFLEM DDLLGPEPND QNSETLVFNG  360
MDGLAEANLY NDAAMLLGDV DDLGPGGLRP VPPPYLPNNL DIGISNAVSR SYLNVVENEA  420
ANDHVHQPSH SEAKQMSFQH WAPEAVSEPV PGTVITVYSS C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-461617217171NO APICAL MERISTEM PROTEIN
1ut4_B2e-461617217171NO APICAL MERISTEM PROTEIN
1ut7_A2e-461617217171NO APICAL MERISTEM PROTEIN
1ut7_B2e-461617217171NO APICAL MERISTEM PROTEIN
3swm_A3e-461617220174NAC domain-containing protein 19
3swm_B3e-461617220174NAC domain-containing protein 19
3swm_C3e-461617220174NAC domain-containing protein 19
3swm_D3e-461617220174NAC domain-containing protein 19
3swp_A3e-461617220174NAC domain-containing protein 19
3swp_B3e-461617220174NAC domain-containing protein 19
3swp_C3e-461617220174NAC domain-containing protein 19
3swp_D3e-461617220174NAC domain-containing protein 19
4dul_A2e-461617217171NAC domain-containing protein 19
4dul_B2e-461617217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017242623.10.0PREDICTED: NAC domain-containing protein 17-like
SwissprotQ9XIC52e-98NAC17_ARATH; NAC domain-containing protein 17
TrEMBLA0A166A7X50.0A0A166A7X5_DAUCS; Uncharacterized protein
STRINGXP_008237396.11e-142(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32122451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-98NAC domain containing protein 17
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Van Aken O, et al.
    Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.
    Plant Physiol., 2016. 171(3): p. 2150-65
    [PMID:27208304]
  3. Van Aken O,Ford E,Lister R,Huang S,Millar AH
    Retrograde signalling caused by heritable mitochondrial dysfunction is partially mediated by ANAC017 and improves plant performance.
    Plant J., 2016. 88(4): p. 542-558
    [PMID:27425258]
  4. Hu Z, et al.
    Mitochondrial Defects Confer Tolerance against Cellulose Deficiency.
    Plant Cell, 2016. 28(9): p. 2276-2290
    [PMID:27543091]
  5. Chi YH, et al.
    The membrane-tethered NAC transcription factor, AtNTL7, contributes to ER-stress resistance in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2017. 488(4): p. 641-647
    [PMID:28088515]
  6. Van Aken O,Pogson BJ
    Convergence of mitochondrial and chloroplastic ANAC017/PAP-dependent retrograde signalling pathways and suppression of programmed cell death.
    Cell Death Differ., 2017. 24(6): p. 955-960
    [PMID:28498364]
  7. Cheng P, et al.
    The ERA-Related GTPase AtERG2 Associated with Mitochondria 18S RNA Is Essential for Early Embryo Development in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 182
    [PMID:29497438]