PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 25175.8 Da PI: 8.1951 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 53 | 103 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+Wv+e+r+p++ + r++lg++ tae+Aa+a + a+ +l+g DCAR_009403 53 PVYRGVRRRN-SGKWVCEVREPVK---NSRIWLGTYPTAEMAARANDVAAIALRG 103 68*****888.8*********766...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.4E-13 | 53 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 54 | 113 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-30 | 54 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.194 | 54 | 111 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-27 | 54 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-9 | 55 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.07E-29 | 55 | 113 | No hit | No description |
PRINTS | PR00367 | 6.7E-9 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDSFLSCPEQ ALSQFPQSLK IDTALDSSCE VLLASVTPKK PSGRKKFQET RHPVYRGVRR 60 RNSGKWVCEV REPVKNSRIW LGTYPTAEMA ARANDVAAIA LRGRNACLNF ADSTWRLPVP 120 DSSTVKDIQK AATKAAEAFR PSTAVKALVL IAADKAAAES FRPPDPAKAL MLQQNLVLYM 180 DEEALFGMPG LINCLAQGML LPPPQRAQSD WDDEVENATD MSLWSYSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 52 | 110 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017237115.1 | 1e-168 | PREDICTED: dehydration-responsive element-binding protein 1D-like | ||||
Swissprot | Q9FJ93 | 4e-70 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A166A250 | 1e-167 | A0A166A250_DAUCS; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037122 | 2e-79 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-71 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009403 |
Publications ? help Back to Top | |||
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