PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_009402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 24070.9 Da PI: 4.4878 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 7.9e-17 | 49 | 100 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r++ +g+Wv+e+r+p + + r++lg++ tae+Aa+a + a+ +l+ge DCAR_009402 49 PVYRGIRRRD-SGKWVCEVREPIK---NSRIWLGTYPTAEMAARANDVAAIALRGE 100 68*****999.7******999743...4**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-12 | 49 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-27 | 50 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 50 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-20 | 50 | 109 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.786 | 50 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-29 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 1.1E-8 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MDQLSSKHDS EGKGKSIDSE GHNSYEVLLA SRNPKKRSGR IKFKETRHPV YRGIRRRDSG 60 KWVCEVREPI KNSRIWLGTY PTAEMAARAN DVAAIALRGE TACLNFEDSV WRLPLPESSD 120 VKDIQIAAAK AAEAFRPPEN EMMSGENTSL VVKEDDEMFD MDEDAIFRMP QLINNMAEGM 180 LISPPQYVQS DGCDELDDDM EDATDLSLWS YSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 48 | 106 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017240549.1 | 1e-158 | PREDICTED: dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9FJ93 | 1e-62 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A166A243 | 1e-157 | A0A166A243_DAUCS; Uncharacterized protein | ||||
STRING | Solyc03g026270.1.1 | 5e-80 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 1e-55 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | DCAR_009402 |
Publications ? help Back to Top | |||
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