PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_009102

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 587aa MW: 64853.8 Da PI: 8.1036

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_009102	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137	6.6e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++lp +reda++sl+yeA+ar+rdP+yG+vg+i+ lq++l+q++ el +k DCAR_009102 7 PCAACKLLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNDLPAVQREDAVNSLAYEADARLRDPIYGCVGLISILQHKLKQVQMELYNAK 104 7*********************************************************************************************9988 PP DUF260 99 ee 100 +e DCAR_009102 105 KE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.936	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-42	7	104	IPR004883	Lateral organ boundaries, LOB
SuperFamily	SSF103473	1.96E-20	239	315	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	1.0E-4	240	311	No hit	No description
SuperFamily	SSF103473	1.96E-20	363	574	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	2.1E-5	377	544	No hit	No description
CDD	cd06174	0.00101	421	541	IPR020846	Major facilitator superfamily domain

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MSSSNSPCAA CKLLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNDLPAVQR 60 EDAVNSLAYE ADARLRDPIY GCVGLISILQ HKLKQVQMEL YNAKKELSTY IGPSAMLPIL 120 PAPGNFIPPY QHQQPSQMMP YNMQAAQMMG GSPQNVVNPN PLVIQQQQNY QQIMEAQQVA 180 AVVAAAREQE MLRSYEQQQA VLTQQQGRHS DQLTTSVVCK PSVQRKKEKE GEIFTSERIS 240 TSWGVGLVIG PAIGGYFAQP AENYPNIFSE KSIFGRFPYF LPCLLISLFA FLVSIISFWL 300 PETLHIHHGN KNEQCDAADA LENSMYKYRV DGVSRHGNKN EQCDAADASE NSMYKSRVDG 360 VIRSKERLPS SKLSLLRNWP LMSAITVYCV FQLHDTAYAE AFTLWADSPR KYGGLHYKIP 420 EVGEVLAISG FGLLILQMFL YPVLERTFGA ILVSRIGAVA TIPLLTCYPY IAKLSGNLLF 480 AVLSCASILM NVLMVSVSTG LYLLQNRAVS SDQRGAANGI SMSALSLFKA FGPACGGSFF 540 SWAQTRQNPT FLPGDQIVFS ILNSIEFIGL AMTFKPFLVL PNDDSQ*

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MSSSNSPCAA CKLLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNDLPAVQR  60
EDAVNSLAYE ADARLRDPIY GCVGLISILQ HKLKQVQMEL YNAKKELSTY IGPSAMLPIL  120
PAPGNFIPPY QHQQPSQMMP YNMQAAQMMG GSPQNVVNPN PLVIQQQQNY QQIMEAQQVA  180
AVVAAAREQE MLRSYEQQQA VLTQQQGRHS DQLTTSVVCK PSVQRKKEKE GEIFTSERIS  240
TSWGVGLVIG PAIGGYFAQP AENYPNIFSE KSIFGRFPYF LPCLLISLFA FLVSIISFWL  300
PETLHIHHGN KNEQCDAADA LENSMYKYRV DGVSRHGNKN EQCDAADASE NSMYKSRVDG  360
VIRSKERLPS SKLSLLRNWP LMSAITVYCV FQLHDTAYAE AFTLWADSPR KYGGLHYKIP  420
EVGEVLAISG FGLLILQMFL YPVLERTFGA ILVSRIGAVA TIPLLTCYPY IAKLSGNLLF  480
AVLSCASILM NVLMVSVSTG LYLLQNRAVS SDQRGAANGI SMSALSLFKA FGPACGGSFF  540
SWAQTRQNPT FLPGDQIVFS ILNSIEFIGL AMTFKPFLVL PNDDSQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-46	4	122	8	131	LOB family transfactor Ramosa2.1
5ly0_B	9e-46	4	122	8	131	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export (PubMed:19440702). K(+) may be the physiological substrate of the transporter (PubMed:23524662). {ECO:0000269\|PubMed:19440702, ECO:0000269\|PubMed:23524662}.; FUNCTION: Isoform 1: Modulates root auxin-related processes. Involved in auxin efflux and acts as a positive regulator of shootward transport at the root apex. May mediate proton efflux from the vacuolar compartment. {ECO:0000269\|PubMed:23524662}.; FUNCTION: Isoform 3: Mediates drought stress tolerance by regulating stomatal closure. {ECO:0000269\|PubMed:23524662}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By 2,4-D treatment. {ECO:0000269\|PubMed:19440702}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017238844.1	0.0	PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like isoform X2
Swissprot	Q94BZ1	1e-112	ZIFL1_ARATH; Protein ZINC INDUCED FACILITATOR-LIKE 1
TrEMBL	A0A165ZRX1	0.0	A0A165ZRX1_DAUCS; Uncharacterized protein
STRING	EOY08671	1e-134	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-68	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	DCAR_009102

Publications ? help Back to Top
Muños S, et al. Transcript profiling in the chl1-5 mutant of Arabidopsis reveals a role of the nitrate transporter NRT1.1 in the regulation of another nitrate transporter, NRT2.1. Plant Cell, 2004. 16(9): p. 2433-47 [PMID:15319483] Haydon MJ,Cobbett CS A novel major facilitator superfamily protein at the tonoplast influences zinc tolerance and accumulation in Arabidopsis. Plant Physiol., 2007. 143(4): p. 1705-19 [PMID:17277087] Waters BM,Grusak MA Quantitative trait locus mapping for seed mineral concentrations in two Arabidopsis thaliana recombinant inbred populations. New Phytol., 2008. 179(4): p. 1033-47 [PMID:18631293] Cabrito TR,Teixeira MC,Duarte AA,Duque P,Sá-Correia I Heterologous expression of a Tpo1 homolog from Arabidopsis thaliana confers resistance to the herbicide 2,4-D and other chemical stresses in yeast. Appl. Microbiol. Biotechnol., 2009. 84(5): p. 927-36 [PMID:19440702] Remy E, et al. A major facilitator superfamily transporter plays a dual role in polar auxin transport and drought stress tolerance in Arabidopsis. Plant Cell, 2013. 25(3): p. 901-26 [PMID:23524662]