PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008812 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | WOX | ||||||||
Protein Properties | Length: 237aa MW: 26949.2 Da PI: 10.0302 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.2 | 2.1e-21 | 90 | 149 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ DCAR_008812 90 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITTQLgkygKIEGKNVFYWFQNHKARERQ 149 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.8 | 4.9e-38 | 90 | 151 | 4 | 65 |
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L +yGkie+kNVfyWFQN+kaRerqkq DCAR_008812 90 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITTQLGKYGKIEGKNVFYWFQNHKARERQKQ 151 8***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-13 | 84 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.155 | 85 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-7 | 87 | 154 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.6E-19 | 90 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.28E-4 | 90 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-8 | 91 | 149 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MKVHHQFARG IINGWDYQQQ HEPSSSLTLG FCKRLRPLMP KEPVGGDGGG GDVGFDLKSF 60 IRPDCGSRKS DVSSSDEKRE PLNQTHPGGT RWNPTQEQIG ILEMLYRGGM RTPNAQQIEQ 120 ITTQLGKYGK IEGKNVFYWF QNHKARERQK QKRSSLGLSH SPRSSSTSFS TITLSTRGDN 180 KQVQESSPIL KRKCRAWSFE KLEEDKSYSR REDEESDKIN KTLELFPLHP EGRIIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017239053.1 | 1e-176 | PREDICTED: WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7J9 | 5e-73 | WOX4_ARATH; WUSCHEL-related homeobox 4 | ||||
TrEMBL | A0A165ZI69 | 1e-175 | A0A165ZI69_DAUCS; Uncharacterized protein | ||||
STRING | EOY14402 | 2e-90 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6186 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46480.1 | 5e-68 | WUSCHEL related homeobox 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008812 |