PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008612
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 315aa    MW: 35249.5 Da    PI: 6.6244
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008612genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ede lv+++++ G+g+W++ ++  g+ R++k+c++rw +yl
      DCAR_008612 14 RGPWTSDEDEALVQYINKNGPGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding48.12.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+e+++l ++++ +lG++ W++Ia  ++ gRt++++k+ w+++l
      DCAR_008612  67 RGPFTPEDEKLVIQLHGMLGNR-WAAIATQLP-GRTDNEIKNLWNTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.57961IPR017930Myb domain
SuperFamilySSF466897.34E-3011108IPR009057Homeodomain-like
SMARTSM007178.6E-131363IPR001005SANT/Myb domain
PfamPF002493.5E-151461IPR001005SANT/Myb domain
CDDcd001677.15E-101661No hitNo description
PROSITE profilePS5129425.11562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2565117IPR009057Homeodomain-like
SMARTSM007176.4E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
CDDcd001673.74E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKRKPCCDKE GMKRGPWTSD EDEALVQYIN KNGPGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPEDEKLVIQ LHGMLGNRWA AIATQLPGRT DNEIKNLWNT HLKKRLISKG  120
IDPETHEPCT SMNGSLIRSS ASPSARHMAQ WETARLEAES RLSKESSLVI PPSHTTKPDA  180
DFFLRMWKSE VGDSFRNLNK VTEPENCPSP FSQASSAKNG SVSGITTELC LTAAASEFPL  240
EKKLKEADDD QNLKSNTDHY YTATSYSSSP DDLEDPSNTA VQLLWDFPGS NDMSFLEGHI  300
DNYDIYRAIS DYST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235873.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ9M2D91e-110MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A166FH400.0A0A166FH40_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000000941e-131(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-112myb domain protein 17