PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_008102

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 414aa MW: 45808.7 Da PI: 5.106

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_008102	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.9	0.00021	329	361	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk L DCAR_008102 329 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKLL 361 55666677777776.....8****************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.522	312	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-4	322	365	No hit	No description
SuperFamily	SSF47459	1.31E-9	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-7	326	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MADKFQAGVC AENWWMNPYQ SNFGSSVCSP IINNMDMFSW PADLDTKARA STDDQSGSAN 60 NSEGSIFFQD TQKPLNHDSV EGNLLSVNSG LDLMDNGLSS SITTADWNQA LFHDSKRNEC 120 NYQHSLQDSL NPSSNYQQAV GVDHFSQIKK DWSPENFSAI DEVTSLDAYK GPTNQGFPVN 180 SSSYGYTSSL IQTLFDTNSD QDTIFGNRSM DYPDTTNLYQ EKLNGFLSSS LHKPSPALPK 240 QAPLLDNSTW SSASSNGLFS TPLQSKFLPP TFEEKLSCSN LGVKPNNERI RDMSKVVKNN 300 SSTEPVFKRP RMETPSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV LHEAIEYIKL 360 LHDQVTTLGD PKRADHQELR SRGLCVVPVS STFPVASETT ADFWTPTFGK NFR*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MADKFQAGVC AENWWMNPYQ SNFGSSVCSP IINNMDMFSW PADLDTKARA STDDQSGSAN  60
NSEGSIFFQD TQKPLNHDSV EGNLLSVNSG LDLMDNGLSS SITTADWNQA LFHDSKRNEC  120
NYQHSLQDSL NPSSNYQQAV GVDHFSQIKK DWSPENFSAI DEVTSLDAYK GPTNQGFPVN  180
SSSYGYTSSL IQTLFDTNSD QDTIFGNRSM DYPDTTNLYQ EKLNGFLSSS LHKPSPALPK  240
QAPLLDNSTW SSASSNGLFS TPLQSKFLPP TFEEKLSCSN LGVKPNNERI RDMSKVVKNN  300
SSTEPVFKRP RMETPSPLPT FKVRKEKLGD RVTALQQLVS PFGKTDTASV LHEAIEYIKL  360
LHDQVTTLGD PKRADHQELR SRGLCVVPVS STFPVASETT ADFWTPTFGK NFR*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231973.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A166F2K4	0.0	A0A166F2K4_DAUCS; Uncharacterized protein
STRING	VIT_00s0274g00070.t01	1e-121	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	6e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_008102