PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008095 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 28019 Da PI: 4.3049 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 1.9e-15 | 7 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd lv+++ ++G +W+ +++ g+ Rt+k+c++rw +yl DCAR_008095 7 CPWTPEEDMVLVNYISRYGIWNWSQMPKHAGLSRTGKSCRLRWMNYL 53 69*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 40.6 | 6.1e-13 | 59 | 101 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEde++++ +q G g W++Ia+ ++ gRt++++k+rw++ DCAR_008095 59 RGNYTQEEDEIIINM-RQNGAG-WSAIAASLP-GRTDNEIKNRWHS 101 899***********7.99****.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.799 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.18E-27 | 4 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-12 | 5 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-13 | 6 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.71E-11 | 8 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-24 | 8 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.595 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-8 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-11 | 59 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-9 | 61 | 103 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-22 | 61 | 107 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MVTFKKCPWT PEEDMVLVNY ISRYGIWNWS QMPKHAGLSR TGKSCRLRWM NYLDPQVKRG 60 NYTQEEDEII INMRQNGAGW SAIAASLPGR TDNEIKNRWH SRLSKRLASN RVESMEPYTE 120 QIVSELDTMM IDDYLMDFDF PEAPNFETEN EDHSLSSHSL NVGASSNNRV PPAFGTSTED 180 PHVSFWREPF SLENVDDIDE YATYFDPQFG MLNPEDLFGE PFSSYYDMFE ICSGSGSIYN 240 YV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-24 | 6 | 107 | 7 | 108 | B-MYB |
1h8a_C | 1e-24 | 4 | 107 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233721.1 | 0.0 | PREDICTED: transcription factor MYB21-like | ||||
Swissprot | Q9LTC4 | 9e-45 | MYB15_ARATH; Transcription factor MYB15 | ||||
TrEMBL | A0A166F2D6 | 0.0 | A0A166F2D6_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 4e-47 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008095 |