PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_008015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 204aa MW: 21896.4 Da PI: 8.8757 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.8e-16 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ gr+ AeIrdp + + ++lg+f+tae Aa+a ++a++k++g DCAR_008015 36 RYRGVRKRP-GGRYGAEIRDPET---KNCIWLGTFDTAELAARAFDEAARKYRG 85 69*******.9*********744...389***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-8 | 36 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.903 | 36 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-27 | 36 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-18 | 36 | 94 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.16E-25 | 36 | 93 | No hit | No description |
SMART | SM00380 | 3.4E-29 | 36 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-7 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MASKEKAAAE SSKAVEASVN AEESSKTLEP KGEEVRYRGV RKRPGGRYGA EIRDPETKNC 60 IWLGTFDTAE LAARAFDEAA RKYRGDTAKT NFPTPDANHK RRNDGEMMGQ ERFAAALNPN 120 LAALNGGAGS SLGYRSGGGF PLTYPYYGKP YVPMQGYRLP SNPEFQANII ASGSHLASPS 180 SVIDVNPTRK GLDLDLNLPP PSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-16 | 33 | 93 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233705.1 | 1e-148 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
TrEMBL | A0A166EZX2 | 1e-146 | A0A166EZX2_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4341 | 12 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-18 | ethylene responsive element binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_008015 |