PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 26686.9 Da PI: 8.6143 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.4e-20 | 124 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a+++a+ +++g DCAR_007861 124 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFETAEGAARAYDKAAIEFRG 173 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.317 | 124 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.35E-34 | 124 | 181 | No hit | No description |
Pfam | PF00847 | 2.9E-13 | 124 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 124 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 124 | 182 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.7E-37 | 124 | 187 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MQTKTHKSPL NHLDATNSDN QTSKRLRFSP DEESFIMVSA LTNIITGNTS FLPETTRESR 60 IISTGSTTKA STSFFPETTE MCKFCNIAGC LGCDFFAVED NNNSKNKGKI VDAVTKKKKK 120 KKKNYRGVRQ RPWGKWAAEI RDPRKAARVW LGTFETAEGA ARAYDKAAIE FRGARAKLNF 180 PFADYNFASQ QQKQEETVES RQEEEDRKED DLRINGMEMT GDDDFEKWMV MMDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-25 | 123 | 182 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 122 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233681.1 | 1e-165 | PREDICTED: uncharacterized protein LOC108207762 | ||||
Swissprot | Q9SZ06 | 9e-35 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A166EVB1 | 1e-174 | A0A166EVB1_DAUCS; Uncharacterized protein | ||||
STRING | Lus10014054 | 5e-55 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-35 | redox responsive transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007861 |
Publications ? help Back to Top | |||
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