PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007725

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TALE

Protein Properties

Length: 588aa MW: 65065.7 Da PI: 6.8237

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007725	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25	3.1e-08	506	544	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +++ LA k gLt +qV++WF N R + DCAR_007725 506 MFQNflHPYPKDADKHLLAVKSGLTRSQVSNWFINARVR 544 5887779******************************88 PP
2	BELL	73.8	2.9e-24	379	446	3	71
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 qe +kk +L++lle+Vd+rY+q ++++ vis+F+av++l++ +++++lAl++iS +++L+++i++ DCAR_007725 379 QEAAAKKKHLINLLEMVDNRYNQSLDEIHKVISAFHAVTELDP-QIHARLALQTISLLYQSLRERISNY 446 78899************************************.********************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.3E-16	306	445	IPR006563	POX domain
Pfam	PF07526	2.1E-22	312	444	IPR006563	POX domain
PROSITE profile	PS50071	10.867	485	548	IPR001356	Homeobox domain
CDD	cd00086	5.59E-11	488	549	No hit	No description
SMART	SM00389	2.7E-5	488	552	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-15	490	557	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-25	491	554	IPR009057	Homeodomain-like
Pfam	PF05920	5.5E-15	505	544	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MDNDIFGVPA DTVYQNPVAG SGNVLSSTLF SFLQSHPHDL TNQNQIMAGF PALSVMQVET 60 PDELHDVHQL TSHAGFDTSN ALVLKGPQPG RNVTGNTSIC PPGSPSNKEA DVRFMAGMHN 120 STTSLATLLA GRYGNHRNLN DIERLGYSGH HREVPEILGS NEYADLVQSS YGTSMDYNND 180 VMLGNVSCKW GSHKFAAPQS AGTVPQRIGL EAYQNMGNMD HNGWTSSENN IGSDNTSDSS 240 KYSNGLSLSL LTSQPATLGG TTIVEHCSGM SASGLSCQSL HGKQLGIEQT SFNSKNMSST 300 FGKNPVQLSD FLSGGRFLSE MQEILAGIAR YSLGNSGRSS CPTSAPVPEE NFSFSFNLST 360 GRQKTVTGTI GNDLMTCEQE AAAKKKHLIN LLEMVDNRYN QSLDEIHKVI SAFHAVTELD 420 PQIHARLALQ TISLLYQSLR ERISNYILSL GVHVNEGGSE EEERSFETSF IQKQWALQQL 480 RQKDHQLWRP QRGLPERSVS VLRAWMFQNF LHPYPKDADK HLLAVKSGLT RSQVSNWFIN 540 ARVRLWKPMI DEMYSEMNRR KICQNGDEIN SQHKNRFNID SQRFRMI*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MDNDIFGVPA DTVYQNPVAG SGNVLSSTLF SFLQSHPHDL TNQNQIMAGF PALSVMQVET  60
PDELHDVHQL TSHAGFDTSN ALVLKGPQPG RNVTGNTSIC PPGSPSNKEA DVRFMAGMHN  120
STTSLATLLA GRYGNHRNLN DIERLGYSGH HREVPEILGS NEYADLVQSS YGTSMDYNND  180
VMLGNVSCKW GSHKFAAPQS AGTVPQRIGL EAYQNMGNMD HNGWTSSENN IGSDNTSDSS  240
KYSNGLSLSL LTSQPATLGG TTIVEHCSGM SASGLSCQSL HGKQLGIEQT SFNSKNMSST  300
FGKNPVQLSD FLSGGRFLSE MQEILAGIAR YSLGNSGRSS CPTSAPVPEE NFSFSFNLST  360
GRQKTVTGTI GNDLMTCEQE AAAKKKHLIN LLEMVDNRYN QSLDEIHKVI SAFHAVTELD  420
PQIHARLALQ TISLLYQSLR ERISNYILSL GVHVNEGGSE EEERSFETSF IQKQWALQQL  480
RQKDHQLWRP QRGLPERSVS VLRAWMFQNF LHPYPKDADK HLLAVKSGLT RSQVSNWFIN  540
ARVRLWKPMI DEMYSEMNRR KICQNGDEIN SQHKNRFNID SQRFRMI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	7e-15	494	552	5	63	Homeobox protein Meis2
3k2a_B	7e-15	494	552	5	63	Homeobox protein Meis2
4xrs_A	5e-15	494	551	1	58	Homeobox protein Meis1
4xrs_B	5e-15	494	551	1	58	Homeobox protein Meis1
5bng_A	6e-15	494	552	1	59	Homeobox protein Meis2
5bng_B	6e-15	494	552	1	59	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:17908157}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017232080.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Refseq	XP_017232081.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Refseq	XP_017232082.1	0.0	PREDICTED: homeobox protein BEL1 homolog
Swissprot	P48731	8e-92	ATH1_ARATH; Homeobox protein ATH1
TrEMBL	A0A166ERL7	0.0	A0A166ERL7_DAUCS; Uncharacterized protein
STRING	VIT_04s0008g00880.t01	1e-166	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8261	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	4e-90	homeobox gene 1

Link Out ? help Back to Top
Phytozome	DCAR_007725

Publications ? help Back to Top
Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]