PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007694
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 509aa    MW: 55956.3 Da    PI: 5.8212
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007694genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-1331122399
                  EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  k+l   +  +++ l+lp k  +++ ++++    + +l+d++g++Wev+l   k + +  +++GW++F +++gLk+g ++ F+++ +    +vv +f++
  DCAR_007694  31 KILFGGYDISKD-LCLPQKISQAIpNLVPGD--KYILQDTNGQQWEVTLG-IKDKIHWAFREGWNKFYEDHGLKTGYILAFHYTMDAP--FVVEIFDR 122
                  556566666776.999999999998777644..799*************3.444445789**********************965555..5*****98 PP
2B338.22.6e-124444993390
                  -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3  33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +k + l+ ++ ++W v +   +k g   lt+GW++F+ +ngL+ gD + Fkl++++++
  DCAR_007694 444 KKVVNLQGPNQKVWPVLY--HNKLGIKALTSGWENFCMSNGLRIGDECAFKLVDEEKT 499
                  5679999***********..9999999************************9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.64628123IPR003340B3 DNA binding domain
CDDcd100174.28E-1329121No hitNo description
SuperFamilySSF1019363.14E-1329123IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-529123IPR003340B3 DNA binding domain
PfamPF023628.9E-1133122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.3E-1337123IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0096421504IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.6E-12442499IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-12442505IPR015300DNA-binding pseudobarrel domain
PfamPF023629.0E-10443499IPR003340B3 DNA binding domain
CDDcd100172.91E-10443505No hitNo description
PROSITE profilePS5086310.941447508IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MGDKELACGE CKHKDSLIHG KKAAPVTTFN KILFGGYDIS KDLCLPQKIS QAIPNLVPGD  60
KYILQDTNGQ QWEVTLGIKD KIHWAFREGW NKFYEDHGLK TGYILAFHYT MDAPFVVEIF  120
DRTGFEKINF PVATGKKRKT SENDGNCNAI VGECQNLSNH SSKNQGVAFS GTSDSEARTQ  180
SQPMSKDKSL SLENGNGEYQ LAASANCDIE PHCMIDRYDG SKYEQDRTTV LNLANSEMQF  240
GVELDGSTDK GTYPSNAATE SDAIAGNISE NLESAKVVIG DPPAEVAVTL SNSNNNITSE  300
YVAEVFDDHH GSNPPAEVVV ALSNNNNITS EYVAEVINDN HGSNQVHSES RIKSSTGSRK  360
RVRREPARSV RQSKRNSTKI SKRTNQISGG EERENEVRKV TKTELVNSSD GDSLDASAFS  420
FTAIVRSPEV LEVAAAVILW ADEKKVVNLQ GPNQKVWPVL YHNKLGIKAL TSGWENFCMS  480
NGLRIGDECA FKLVDEEKTI FRIDVKTK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234508.10.0PREDICTED: uncharacterized protein LOC108208484
TrEMBLA0A166EQS70.0A0A166EQS7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.13e-08B3 family protein