PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 525aa MW: 58361.6 Da PI: 6.5085 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 366.7 | 3.2e-112 | 152 | 523 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 lv+lL++cAeav+ +d++ a+ lLa+l+ +a g+++qR+a++f+++L rla ++ l++ + + ++ s+++ al+l +ev+P ++f+h+ DCAR_007469 152 LVQLLISCAEAVACRDKSHASILLAELRANALVFGSSFQRVASCFVQGLTDRLALVQPLGTVGLTAATMNIMDiaSEKKEEALRLVYEVCPHIQFGHF 249 689***************************************************95555555556666666667788889999*************** PP GRAS 97 taNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 +aN Ilea+ege+ vH++D+++s +G QW L+++La+R+++pp +RiTgvg ++++ +g+ L+ +A +lg+++ef+v v+++le+l DCAR_007469 250 VANLSILEAFEGEKFVHVVDLGMSlglpHGQQWRHLINSLANRTGQPPhCVRITGVGL----CVDQYQIIGDELEAYAGSLGINLEFSV-VESSLENL 342 ********************99874444678*************887747********....**************************9.799***** PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 ++e+++++++E++a+n++lqlh +++es + +vL+++ +lsPkv+v+veq+++hn++ Fl rf+eal+yysa+fdsl+a lp+ + r+k+E+ DCAR_007469 343 RPEDIKLRKNEVVAINSILQLHCVVKESRGALN---AVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKIEQ 437 *************************88887777...9************************************************************* PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++ei+n+v+ceg +r erhe++ +Wr+r+++aGF+p+p++ a ak l k + +gy++ ee+g+lvlgWk++p+v++S+W+ DCAR_007469 438 FYFAEEIKNIVSCEGPARMERHERVDQWRRRMSRAGFQPAPIKMIAR--AKEWLGKREyCEGYTIVEEKGCLVLGWKSKPIVAASCWK 523 ******************************************87654..45555555559***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.05 | 126 | 504 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-109 | 152 | 523 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MAYSFSAHPL YDNEQNVQLS GLDSRSSAMA DYPFVHLQNV NDVASTWIPT LSDETGSYKR 60 LKRTTSMGEF LESTYNSLYS KGSVGSRSSS MISRTISTSS LNSLPGLHIR DHIKTYTQRY 120 LAAEGVEEAT SEITGPENGE TREDGVADGM RLVQLLISCA EAVACRDKSH ASILLAELRA 180 NALVFGSSFQ RVASCFVQGL TDRLALVQPL GTVGLTAATM NIMDIASEKK EEALRLVYEV 240 CPHIQFGHFV ANLSILEAFE GEKFVHVVDL GMSLGLPHGQ QWRHLINSLA NRTGQPPHCV 300 RITGVGLCVD QYQIIGDELE AYAGSLGINL EFSVVESSLE NLRPEDIKLR KNEVVAINSI 360 LQLHCVVKES RGALNAVLQI IHELSPKVLV LVEQDSSHNG PFFLGRFMEA LHYYSAIFDS 420 LDAMLPKYDT RRAKIEQFYF AEEIKNIVSC EGPARMERHE RVDQWRRRMS RAGFQPAPIK 480 MIARAKEWLG KREYCEGYTI VEEKGCLVLG WKSKPIVAAS CWKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-64 | 135 | 522 | 1 | 377 | Protein SCARECROW |
5b3h_D | 2e-64 | 135 | 522 | 1 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017231414.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A166EJ48 | 0.0 | A0A166EJ48_DAUCS; Uncharacterized protein | ||||
STRING | XP_009359535.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8167 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 6e-79 | RGA-like 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007469 |