PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007442
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 688aa    MW: 76660.7 Da    PI: 8.9497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007442genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07592641147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      DCAR_007442 592 RRPFSVSEVEALVHAVERLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 641
                      678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.598587646IPR017930Myb domain
SMARTSM007173.7E-7591644IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-10592642IPR009057Homeodomain-like
SuperFamilySSF466892.99E-15593674IPR009057Homeodomain-like
CDDcd116606.87E-17593643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MLQKRLNIVF NGHEVPPVPR AARSPRRRLP CRKKIGDHQM CAFDLLATVA GKLLEGESTP  60
SATELLIGED ESSLGKDFLK TEKVAEENPE QVNPSHKEDR GRILFVSDTN PQAPEERHDI  120
KGVPNVQNDA CSAFASAVTT RDGPEMFGSA SKLVNDESRI KYGNLSKVDV GQYHSATSLY  180
SLDVKSKNCM KIEPQMIGKD PSSAGDVICL EDLIVQNVKP PVQDKSDNID QPAVKPSVLH  240
RSSQKALFRD QTSCGFFPGC RNNVNLVVRD DDENSSWCTP PRKINKVFWP PARNGDRRIK  300
RLLASRYWKA TLKSSKRDCY ITGLDTRYAY HNRVKDYKRQ RSLRDHPIKK RKLYDHTFTT  360
NAYERVNKNN ASFSSGKSYG GNASSVATMH EATGTSSFAA SPQKCAQTND SHVRVPELFF  420
EIPETATVGS LKRTVMETVT SILGGGLCVG VLVKGKKIRD DNKTLVQTGI YNDDRADALG  480
FTLEPLSSQV PSAQCLEDHT FIPPEELTRC PHASTIVKQG DSDVLPEVCA TKIFNCLESD  540
HDSAPSPPDM SRDKCQIDSR DLIASPQISA EVLSAVPIQS SKKLDIGQRR TRRPFSVSEV  600
EALVHAVERL GTGRWRDVKM RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE  660
LLDRVMAAHA FWSQQQTKQH SEASLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-545796824107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337352KRQRSLRDHPIKKRKL
2342351LRDHPIKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234936.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A161X6L60.0A0A161X6L6_DAUCS; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-108TRF-like 2