PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRAS | ||||||||
Protein Properties | Length: 519aa MW: 59082 Da PI: 4.3335 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 125.1 | 8.4e-39 | 160 | 518 | 9 | 374 |
GRAS 9 AeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106 ea+++g+ l++a+++r +e a p+g++ qRl+ yf++ L++++ l+ ++s + a+ ++++++P+ +f+h++aN+ Il+a+ DCAR_007350 160 GEAIENGQVDLVDAIVKRFEEKADPTGETYQRLVYYFVQSLEKHMDY--------LR--QES---FKIFKPAFLALYQIFPYGRFAHFLANSEILNAM 244 589******************************************98........22..222...3344456778*********************** PP GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 ++ ++ i+Dfdi++GlQWp+L++ L ++ p +++ + e + + eet+++L + A+ +++++e+ + ++e+l +ee ++k+ DCAR_007350 245 PQDAEMTIVDFDIGEGLQWPSLFEFLGR-KKHPCLVKLILIRWDEDNnnastCLWKFEETKRQLYEHARCCNLKLEIVEM---SMEEL-TEETKTKRS 337 ***********************99986.5777899999987655555566677899*******************9876...89999.8899***** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvk.......slsPkvvvvveqeadh..nsesFlerflea.leyysalfdsleaklpres.eerikvE 286 E + n++ +l ++ +s s++s e+Lk+ k s+++ ++++ + ++ n+ s + flea + + al++s++ lp + e+r +E DCAR_007350 338 EWITFNCMTNLPHMG-RSRSTKS-VIEFLKIAKgsincdgSTKSGIITFGDGLMEErkNDCSGFGSFLEArMLHLHALLESMDLHLPFQLiEARLAME 433 **************8.5556665.678888887544444468999*****97665544666666666666378999***********99978899999 PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 ++++ ++ ac +++ e+ + + +++ G++ +ls++ ++ + ll + ++ gy ++ e+++++vlg k+++Lv vS+W+ DCAR_007350 434 CLFVAPYMSS-FACLQNW-----EEISFGVDGFSMLGLEGKRLSQDSIAEGQELLGERGMSGYWIKnqgENENEIVLGYKGNTLVKVSCWK 518 8877766665.5666666.....456667899**********************************77777*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.177 | 126 | 495 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-36 | 160 | 518 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MMQQGELLEV TWPYNTGNFS FDGVELYGLD MCNNFGSLDF SPSFLSATPD YSSEISSPDQ 60 YLSSGPSDGS HNCLEFRHQL PKLEESQMIG NSETGVIFDE VSCLSELMEL ENSYYSKEVL 120 SDNKDYSLEV PSAQLSICFP QEDVEIDIQL SICYLIQAYG EAIENGQVDL VDAIVKRFEE 180 KADPTGETYQ RLVYYFVQSL EKHMDYLRQE SFKIFKPAFL ALYQIFPYGR FAHFLANSEI 240 LNAMPQDAEM TIVDFDIGEG LQWPSLFEFL GRKKHPCLVK LILIRWDEDN NNASTCLWKF 300 EETKRQLYEH ARCCNLKLEI VEMSMEELTE ETKTKRSEWI TFNCMTNLPH MGRSRSTKSV 360 IEFLKIAKGS INCDGSTKSG IITFGDGLME ERKNDCSGFG SFLEARMLHL HALLESMDLH 420 LPFQLIEARL AMECLFVAPY MSSFACLQNW EEISFGVDGF SMLGLEGKRL SQDSIAEGQE 480 LLGERGMSGY WIKNQGENEN EIVLGYKGNT LVKVSCWK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233614.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A162AVM2 | 0.0 | A0A162AVM2_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 6e-17 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007350 |