PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_007333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24462.8 Da PI: 6.9794 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.6 | 1.2e-39 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa+dC++apyf+++q p++fa++hk+FGasnv+kll ++p +r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l ++ DCAR_007333 10 PCGACKFLRRKCATDCIFAPYFCSDQgPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQLMQV 107 7*************************99*******************************************************************999 PP DUF260 98 kee 100 k++ DCAR_007333 108 KSQ 110 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.781 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-38 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MAAASGTSSP CGACKFLRRK CATDCIFAPY FCSDQGPARF AAIHKVFGAS NVSKLLLHVP 60 VADRCEAVVT IAYEAQARIR DPVYGCVAHI FALQQQVAYL QAQLMQVKSQ MTQSLIDSRT 120 SEIQWSGNMC MGGNGMQTTL PPAYDNYSSH SSAKNEYMNS VSPQSSMESG DYGNEGMNMQ 180 EIQSRDDQLM LLIQNAMKRP PDSFSPTEYG ELQSLAHRMM RN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-35 | 6 | 113 | 7 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-35 | 6 | 113 | 7 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017235522.1 | 1e-168 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 1e-69 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A166EFI2 | 1e-166 | A0A166EFI2_DAUCS; Uncharacterized protein | ||||
STRING | XP_009781596.1 | 5e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-60 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_007333 |