PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007178
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 376aa    MW: 43501.8 Da    PI: 9.2684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007178genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94e-066080323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C dCg sF+ + +Lk+H ++H
  DCAR_007178 60 CDDCGLSFRKPAHLKQHVQSH 80
                 ******************999 PP
2zf-C2H219.13.6e-06101125123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++Cp  dC+ +++rk++L+rH+  H
  DCAR_007178 101 FTCPidDCNSRYTRKDHLNRHLLQH 125
                  89*******************9887 PP
3zf-C2H221.36.9e-07130155123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                  ++Cp  +C+++Fs++ n+krH ++ H
  DCAR_007178 130 FTCPstYCNRRFSNQGNMKRHVKKfH 155
                  89*********************999 PP
4zf-C2H219.33e-06169193123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  + Cp   Cgk+F+  s Lk+H  +H
  DCAR_007178 169 HICPepGCGKVFKYASKLKKHEDSH 193
                  679999***************9888 PP
5zf-C2H217.31.4e-05260284223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC+  dC  +Fs+ksnL++Hi+  H
  DCAR_007178 260 KCSfnDCLHTFSSKSNLNQHIKAvH 284
                  79999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.71E-71280No hitNo description
PROSITE profilePS501578.5591441IPR007087Zinc finger, C2H2
SMARTSM00355321436IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1595885IPR007087Zinc finger, C2H2
SMARTSM003550.0995880IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-560100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.59E-698127No hitNo description
Gene3DG3DSA:3.30.160.607.9E-11101127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003559.1E-4101125IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785101130IPR007087Zinc finger, C2H2
PROSITE patternPS000280103125IPR007087Zinc finger, C2H2
SuperFamilySSF576671.78E-5128156No hitNo description
Gene3DG3DSA:3.30.160.601.6E-5128156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.006130155IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.51130160IPR007087Zinc finger, C2H2
PROSITE patternPS000280132155IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-8166193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.64E-5167194No hitNo description
PROSITE profilePS5015710.388169198IPR007087Zinc finger, C2H2
SMARTSM003550.0011169193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
SMARTSM003555.2201226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280203226IPR007087Zinc finger, C2H2
SMARTSM0035521229250IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.51E-7241297No hitNo description
PROSITE profilePS5015712.424259289IPR007087Zinc finger, C2H2
SMARTSM003550.02259284IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-5260287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280261284IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.3E-4288302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035512290316IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280292316IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEKEGPIFRD IRRYYCEYCG ICRSKKSLIS SHVLSHHQDK VNEIKADDNG EKEGLKSNFC  60
DDCGLSFRKP AHLKQHVQSH SLEGYMFLQL VTNGNKLDRP FTCPIDDCNS RYTRKDHLNR  120
HLLQHQGKLF TCPSTYCNRR FSNQGNMKRH VKKFHKDSLP IKVDAPKEHI CPEPGCGKVF  180
KYASKLKKHE DSHVKLESTE AYCTDPGCMK YFTNEQCLKA HIQSCHRHIT CEFCGTKQLK  240
KNIKRHLLTH DVKPPSERMK CSFNDCLHTF SSKSNLNQHI KAVHLQQRPF VCSIHGCGMR  300
FTFKHVKDKH EKSGCHLYTQ GDFVETDEQF RSRPRGGRKR VCPSIETFTR KRVVLPSSES  360
ASIIDQGPDY NSWLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-156223519174PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-156223519174PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231154.10.0PREDICTED: transcription factor IIIA
RefseqXP_017231155.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-128TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A166EBK30.0A0A166EBK3_DAUCS; Uncharacterized protein
STRINGVIT_08s0040g00240.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-130transcription factor IIIA