PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_007020

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Trihelix

Protein Properties

Length: 372aa MW: 42416.4 Da PI: 5.8866

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_007020	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.2	1.2e-24	64	133	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W ++e++aLi +rre++ ++++k++k+lW+++s+kmre+gf rsp++C++kw+nl k++kk k++++ + DCAR_007020 64 WVQEETRALISFRRETDALFNTSKSNKHLWDQISAKMREKGFDRSPTMCTDKWRNLLKEFKKSKHQSNAK 133 ****************************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-4	55	125	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.618	56	120	IPR017877	Myb-like domain
SMART	SM00717	6.1E-5	60	122	IPR001005	SANT/Myb domain
CDD	cd12203	1.60E-28	62	127	No hit	No description
Pfam	PF13837	8.2E-18	63	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MLYEKAPQPQ PIDFYKDESQ TPNSILIEHP SSTVLNHHQP MILGDSSGGD EDNPKAPKRR 60 AETWVQEETR ALISFRRETD ALFNTSKSNK HLWDQISAKM REKGFDRSPT MCTDKWRNLL 120 KEFKKSKHQS NAKMCCYKEI EEIIRNRSNK STPDFFKADS PKVDTFMQFS DKGTDDTSAI 180 TYGPVEAKGS APLNLERQLD HDGHPLAITA DTIAANGISP WDWRGTPENG GQRNLYEGRV 240 IAVKLGDYTK RIGIDASADS IKDAIKSAFR LRTKRAFWLE DENNVVRSLD RDMPLGNYVL 300 HVDEGVTVKL CLYEEPDSLP VHTEDKTFYT EDDFRDYLSR RGWTCLREYE GFRSADNMDD 360 LCPGAIYRGV N*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MLYEKAPQPQ PIDFYKDESQ TPNSILIEHP SSTVLNHHQP MILGDSSGGD EDNPKAPKRR  60
AETWVQEETR ALISFRRETD ALFNTSKSNK HLWDQISAKM REKGFDRSPT MCTDKWRNLL  120
KEFKKSKHQS NAKMCCYKEI EEIIRNRSNK STPDFFKADS PKVDTFMQFS DKGTDDTSAI  180
TYGPVEAKGS APLNLERQLD HDGHPLAITA DTIAANGISP WDWRGTPENG GQRNLYEGRV  240
IAVKLGDYTK RIGIDASADS IKDAIKSAFR LRTKRAFWLE DENNVVRSLD RDMPLGNYVL  300
HVDEGVTVKL CLYEEPDSLP VHTEDKTFYT EDDFRDYLSR RGWTCLREYE GFRSADNMDD  360
LCPGAIYRGV N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-39	58	139	1	86	DNA binding protein GT-1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	59	PKAPKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017231611.1	0.0	PREDICTED: trihelix transcription factor GT-1 isoform X2
Swissprot	Q9FX53	1e-156	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A162AUQ8	0.0	A0A162AUQ8_DAUCS; Uncharacterized protein
STRING	Migut.E00236.1.p	1e-176	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5113	21	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-159	Trihelix family protein

Link Out ? help Back to Top
Phytozome	DCAR_007020

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]