PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006987 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 477aa MW: 53140.8 Da PI: 6.5602 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.2 | 2.9e-13 | 297 | 342 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++Ns+f Lr ++P+ K++Ka+ L Av YI++L DCAR_006987 297 NHVEAERQRREKLNSKFYALRAVVPHV-----SKMDKASLLGDAVSYINNL 342 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.9E-33 | 43 | 208 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.74E-14 | 292 | 347 | No hit | No description |
SuperFamily | SSF47459 | 1.06E-18 | 292 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.99 | 293 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-17 | 297 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 297 | 342 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.5E-16 | 299 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MEDHQNLLVS SSSSSSMLEL DVENGHYYYP TFSSTPSSSH HLELKHLLET HPCWCYVIFW 60 RSLNTVPPSS SSELVLTWAD GHFRSSSSAA DDKKVVQGKR SDSRELYALF DMESSDVDGN 120 DPEWFYLNSI SRSLPAGGAA AKAFISGNYV WLDGYQELGR FECERAREAL IHGIRTMICF 180 PTAHGVVEMG SSVRINHDLV LVEKIKSLIG SSSSSISTGE LERSARLGSV QEQQDKGLFR 240 DMCKNVKEFD DYDVEKFPKF EIVNFANTND RNDTAKIQKV GKKRGRKPSV GKDRPINHVE 300 AERQRREKLN SKFYALRAVV PHVSKMDKAS LLGDAVSYIN NLRTKVEELE SQVLMSPKNH 360 PPPPPPPQHL NASSTSTGTV SDFEEATAIS TDDDEVEVRL VGTDAMIRVR CKNTNHPGAK 420 LMDALRQLEL QVNHASMSSF DHLMLIDVVI KVPSRGCLQT EDALRRAILS SFSTST* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-24 | 290 | 354 | 1 | 65 | Transcription factor MYC2 |
5gnj_B | 2e-24 | 290 | 354 | 1 | 65 | Transcription factor MYC2 |
5gnj_E | 2e-24 | 290 | 354 | 1 | 65 | Transcription factor MYC2 |
5gnj_F | 2e-24 | 290 | 354 | 1 | 65 | Transcription factor MYC2 |
5gnj_G | 2e-24 | 290 | 354 | 1 | 65 | Transcription factor MYC2 |
5gnj_I | 2e-24 | 290 | 354 | 1 | 65 | Transcription factor MYC2 |
5gnj_M | 2e-24 | 290 | 354 | 1 | 65 | Transcription factor MYC2 |
5gnj_N | 2e-24 | 290 | 354 | 1 | 65 | Transcription factor MYC2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233571.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | A0A166E684 | 0.0 | A0A166E684_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 2e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006987 |