PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006786 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GRF | ||||||||
Protein Properties | Length: 163aa MW: 18354.1 Da PI: 9.039 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 60.7 | 2.3e-19 | 96 | 138 | 1 | 42 |
WRC 1 daepgrCrRtDGKkWRCsrrv.legkklCErHlhrgrsrsrks 42 ++epgrCrRtDGKkWRC r+v +++k+C+rHlhrg sr +++ DCAR_006786 96 EPEPGRCRRTDGKKWRCNRDVaRPDQKYCDRHLHRGGSRLKQQ 138 69****************9973689***********9998776 PP | |||||||
2 | QLQ | 46.7 | 9.5e-17 | 33 | 68 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT Ql++Lk Q+l+yKy+ + PvP++Ll++i+k DCAR_006786 33 SFTFLQLEELKDQVLIYKYIENAIPVPHHLLVPICK 68 7*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.5E-6 | 32 | 68 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 7.3E-12 | 33 | 67 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.346 | 33 | 68 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 20.645 | 96 | 141 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.5E-16 | 97 | 138 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MEPCNPSSKI ARIAEHGRES RICDKGRPRS NCSFTFLQLE ELKDQVLIYK YIENAIPVPH 60 HLLVPICKSV AHSLNGLKGL EFVGGLDCCN YRKNMEPEPG RCRRTDGKKW RCNRDVARPD 120 QKYCDRHLHR GGSRLKQQHN SGGEMLPAKS VSCIPNTTDA LN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234574.1 | 1e-119 | PREDICTED: growth-regulating factor 10-like | ||||
Swissprot | Q6AWX7 | 1e-35 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A161XG78 | 1e-117 | A0A161XG78_DAUCS; Uncharacterized protein | ||||
STRING | VIT_02s0025g04910.t01 | 1e-38 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14471 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 4e-27 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006786 |
Publications ? help Back to Top | |||
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