PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006575 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19561.9 Da PI: 5.3105 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 22 | 72 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp +k+ r++lg+f+taeeAa a++aa+++++g DCAR_006575 22 PHFRGVRKRP-WGRYAAEIRDP---NKKNRVWLGTFDTAEEAAMAYDAAARSFRG 72 689*******.**********9...3369**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.00E-19 | 22 | 80 | No hit | No description |
Pfam | PF00847 | 3.0E-14 | 22 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-35 | 23 | 86 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 23 | 80 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-32 | 23 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.288 | 23 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 24 | 35 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 46 | 62 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MAPKERTAPP LTTKPSTTLK QPHFRGVRKR PWGRYAAEIR DPNKKNRVWL GTFDTAEEAA 60 MAYDAAARSF RGVNAKTNFP RADEIFDINY NLTGIYTTSH CMKDVHGSVS QSSTVESESD 120 ETLDLTLGFT GEWAVNGGSC KVNGCSLNDS EESSVVIDLK LSMGEFNIDL NALPAPEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 20 | 80 | 2 | 63 | ATERF1 |
3gcc_A | 2e-21 | 20 | 80 | 2 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017234597.1 | 1e-132 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
TrEMBL | A0A166DVJ6 | 1e-131 | A0A166DVJ6_DAUCS; Uncharacterized protein | ||||
STRING | VIT_10s0003g00140.t01 | 3e-34 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-24 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006575 |