PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006562
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 377aa    MW: 42331.6 Da    PI: 6.6154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006562genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1011.7e-31259854128
          NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s + + +g++ktLvfykgrap+g+k+dW+mheyrl
  DCAR_006562  25 PQNDWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKVIFS-SLRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 98 
                  4579*************************************.8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.0251130IPR003441NAC domain
SuperFamilySSF1019415.1E-3525130IPR003441NAC domain
PfamPF023651.8E-152598IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSSRMLILTS WSPGTSKKCK IGSTPQNDWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD  60
KVIFSSLRRI GMRKTLVFYK GRAPHGQKSD WIMHEYRLDE HDSTSSITLH SASESAGGED  120
GWVVCRLFKK KNYHRALGSP QGSSSTISLD SRRLIRGSAD HHDQGDVMDQ ILLYMGKSCK  180
KEDLHHQNSS TVINNSNPTS HLQFISTTNP TMISTSSPED DIDDNHLAHA RFLHLPGLEN  240
TSPSLLPPNS NITHQDDKDC SFKSIEQSID DELMFATHQP TIEDHHLEDS KNGYNDWASL  300
HRLVASQLNG QAADTSSKQL STCCYSQDQA LDDDDEDFFS FSFDHHDSEA LQNPPRLSKM  360
NQGPQVNNNE HDIAHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-302613270167NO APICAL MERISTEM PROTEIN
1ut4_B5e-302613270167NO APICAL MERISTEM PROTEIN
1ut7_A5e-302613270167NO APICAL MERISTEM PROTEIN
1ut7_B5e-302613270167NO APICAL MERISTEM PROTEIN
3swm_A6e-302613273170NAC domain-containing protein 19
3swm_B6e-302613273170NAC domain-containing protein 19
3swm_C6e-302613273170NAC domain-containing protein 19
3swm_D6e-302613273170NAC domain-containing protein 19
3swp_A6e-302613273170NAC domain-containing protein 19
3swp_B6e-302613273170NAC domain-containing protein 19
3swp_C6e-302613273170NAC domain-containing protein 19
3swp_D6e-302613273170NAC domain-containing protein 19
4dul_A5e-302613270167NAC domain-containing protein 19
4dul_B5e-302613270167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017234339.10.0PREDICTED: NAC domain-containing protein 43-like
TrEMBLA0A161X4530.0A0A161X453_DAUCS; Uncharacterized protein
STRINGVIT_02s0025g02710.t016e-94(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-60NAC family protein