PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | AP2 | ||||||||
Protein Properties | Length: 468aa MW: 51401.4 Da PI: 8.6166 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30 | 1.3e-09 | 147 | 190 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr d + k+++lg f+ta Aa+a+++a+ k++g DCAR_006477 147 SQYRGVTFYRRTGR------D------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 190 78************......5......56**********************99987 PP | |||||||
2 | AP2 | 40.3 | 7.8e-13 | 233 | 283 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ + +g DCAR_006477 233 SKFRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDSEIEAARAYDKAAIECNG 283 79********.7******...5...334336**********99**********98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.918 | 138 | 198 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-10 | 147 | 199 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-21 | 148 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-10 | 163 | 198 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-24 | 233 | 293 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-16 | 233 | 292 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-8 | 233 | 283 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-30 | 234 | 297 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-15 | 234 | 292 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.092 | 234 | 291 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 235 | 246 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 273 | 293 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MLDLNIDTSS AQYKTVEQQN SSVQNVLEAS VSGTSVSSVV NADEAPASSG ESIAAFGFNM 60 LFEKKCDRNG GSSPGLPELQ LFPVIGGELS NETASSKSLL RPEWLNLSVP EAPMDYRVKM 120 MEEKPPPPVV VQPAVKKSRR GPRSRSSQYR GVTFYRRTGR DCGKQVYLGG FDTAHAAARA 180 YDRAAVKFRG IDADINFTIS DYEDDLKQMK DLTKEEFVQI LRRQSTGFSR GSSKFRGVTL 240 HKCGRWEARM GQLLGKKYVY LGLFDSEIEA ARAYDKAAIE CNGREAVTNF ESSNYEAEVT 300 MSNNNKDRHH DLELNLSIGS LKGNDNMRSM QLNEATYELT NSGKRSKVET FFSAPTREET 360 SRATVASKQN PTWPSIYTTF APNYEDRATR KPEAEAGPSL GFTNWAWQMN GQGIVTPVPL 420 FSTAASSGFS STTPLFSGTL LQSNAQNKKL CVPSPANGTP LYYGGKN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017237047.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1 | ||||
Swissprot | Q8H443 | 2e-94 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A166DT17 | 0.0 | A0A166DT17_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.009G104200.1 | 1e-122 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 4e-87 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006477 |
Publications ? help Back to Top | |||
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