PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006433 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GATA | ||||||||
Protein Properties | Length: 339aa MW: 37101.6 Da PI: 6.6648 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.1 | 1e-17 | 245 | 278 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + DCAR_006433 245 CLHCEITKTPQWRAGPLGPKTLCNACGVRYKSGR 278 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.0E-75 | 1 | 326 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.319 | 239 | 275 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.9E-15 | 239 | 289 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-14 | 243 | 302 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.9E-14 | 243 | 276 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.31E-14 | 244 | 291 | No hit | No description |
Pfam | PF00320 | 2.4E-15 | 245 | 278 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 245 | 270 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MMGSNYNDEM DCGSFFDHID DLIDFPSDND IGFNSGNGND FPSIWSNNVE DLPGPDPIFP 60 GMKNDSASDL SAELAVPYED IVQLEWLSTF VEDSFSGGGM TLNKENVPLN NNASQNQFRT 120 SSPVSVLESS SSSSCSDGKI VPLSPSHRGP QRARSKRPRP ANFRPRSTMQ FVTPTSSVTP 180 DNSGLVNVPM ISSESENFVE SLRIKIPKPV SENKKKQKQK PSFPSSSAEM NCSSPLQQQA 240 SVRKCLHCEI TKTPQWRAGP LGPKTLCNAC GVRYKSGRLF PEYRPAASPT FVPSLHSNSH 300 KKVVEMRIKG GEKKFMNATV PPISSEPEMI PNASLEYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 155 | 159 | KRPRP |
2 | 213 | 220 | KKKQKQKP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00130 | DAP | Transfer from AT1G08010 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017236122.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
Refseq | XP_017236123.1 | 0.0 | PREDICTED: GATA transcription factor 8-like | ||||
TrEMBL | A0A166DRT1 | 0.0 | A0A166DRT1_DAUCS; GATA transcription factor | ||||
STRING | VIT_13s0019g04390.t01 | 1e-125 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2345 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 1e-40 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006433 |