PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_006394
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 553aa    MW: 61355.6 Da    PI: 4.1841
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_006394genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.88.1e-3198551128
          NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +k+++ ewyfFs  dkky +g r+nrat+ gyWk+tgkd++v++ ++++vg+kktLv+++grap+ge+t+Wvmheyrl
  DCAR_006394   9 LKSRDLEWYFFSYLDKKYGNGARTNRATDGGYWKTTGKDRAVYH-RTKVVGMKKTLVYHSGRAPRGERTNWVMHEYRL 85 
                  456777**************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.7171108IPR003441NAC domain
SuperFamilySSF1019411.31E-3810108IPR003441NAC domain
PfamPF023653.8E-141685IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MRGAGKSRLK SRDLEWYFFS YLDKKYGNGA RTNRATDGGY WKTTGKDRAV YHRTKVVGMK  60
KTLVYHSGRA PRGERTNWVM HEYRLIDEEL EKAGILQDAF VLCRVFRKSG SGPKNGEKYG  120
APFVEEEWDD DELVMVPKDE YADEHQISDD AYLDENDLEE ILSAADPVYE SPLPLSVNGA  180
ANQESMNFID EPLGAGDETN YLQEQPDGTT LGDLQSVDGS NYQQQPDGTT LFNLPMQSNM  240
DTISVKHEYI GEPSYTGASS NAENPADVDY LLNEPLLDSM DNPQYVDGSF IETGDLKPSV  300
EADPSSFEML DEYLQFFDST DGNLDYSSFD FPNIDSADGD YLNMVETGDL PTEPASLLSQ  360
DLMPKDANEN IKQETVEGSV LLGGQNHDEN IKQETVEGSL LPEEQNNDVP SSSNAAESDF  420
PYQFNKHASR VLGNYPAPPA FASEFPRKDA ALRFNSASPS SIHVTAGIVQ IRNMSLRGTG  480
ISWSYGKDGR LNVVLSFGLS RVDDITAESE PASSIISSKA QSAVHRGWFY FMCMWVLFLT  540
MSFKIGSYIC AK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-281511475174NAC domain-containing protein 19
3swm_B4e-281511475174NAC domain-containing protein 19
3swm_C4e-281511475174NAC domain-containing protein 19
3swm_D4e-281511475174NAC domain-containing protein 19
3swp_A4e-281511475174NAC domain-containing protein 19
3swp_B4e-281511475174NAC domain-containing protein 19
3swp_C4e-281511475174NAC domain-containing protein 19
3swp_D4e-281511475174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017236520.10.0PREDICTED: NAC domain-containing protein 78
TrEMBLA0A161Y7T70.0A0A161Y7T7_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-106NAC domain containing protein 2