PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | NF-YB | ||||||||
Protein Properties | Length: 141aa MW: 14837.9 Da PI: 5.8564 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 70.6 | 2.6e-22 | 1 | 80 | 17 | 96 |
NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 m++++P+++ is da ++vq+cv +fi +vt+e+ +c + t++++d+l al +lGf +y+ pl +yl++++e++++ DCAR_006320 1 MRRIIPNQGEISADAVKSVQQCVIKFIRYVTAETKTRCGEGMSTTMTAQDVLIALNKLGFGHYIGPLFAYLNRFQEFQAK 80 89**************************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.44E-16 | 1 | 82 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.0E-20 | 1 | 81 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.9E-8 | 1 | 55 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MRRIIPNQGE ISADAVKSVQ QCVIKFIRYV TAETKTRCGE GMSTTMTAQD VLIALNKLGF 60 GHYIGPLFAY LNRFQEFQAK QGPSGEPLVI RRTLQPGGMG IAASFAPGFE VEGLMAMGGF 120 MGDGQNDAPS GSAADSTGDA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 6e-21 | 1 | 76 | 22 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB273720 | 2e-73 | AB273720.1 Daucus carota gene for CCAAT-box binding factor HAP3 homolog, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233480.1 | 2e-99 | PREDICTED: nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A162AT08 | 3e-98 | A0A162AT08_DAUCS; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 6e-25 | NF-YB family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006320 |