PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_006295

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 312aa MW: 35708.9 Da PI: 8.0686

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_006295	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.8	3.8e-48	49	176	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 pGfrFhPt+eel+ +yLk+ ++gk+l+ +vi v+iy ++Pw Lp+ +k +e+ewyfF++rd+k+ +g r+nr+tk+g+Wkatg+d+++++ + DCAR_006295 49 LPGFRFHPTEEELIEFYLKNTIQGKTLHY-DVIGVVNIYGYDPWYLPELAKIGEREWYFFVPRDTKHGSGGRPNRTTKRGFWKATGSDRKIVTLsdPK 145 59************************9.99***********8888999*********************************9876677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++glkktLvfykgrap+g+ktdW+m+eyrl DCAR_006295 146 RVIGLKKTLVFYKGRAPRGSKTDWIMNEYRL 176 88*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-56	43	194	IPR003441	NAC domain
PROSITE profile	PS51005	53.805	48	194	IPR003441	NAC domain
Pfam	PF02365	6.0E-26	50	176	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MYATVQKLTS FELRHSVKEA REIPLDQEII GHLTITYSMD KSPPTKLQLP GFRFHPTEEE 60 LIEFYLKNTI QGKTLHYDVI GVVNIYGYDP WYLPELAKIG EREWYFFVPR DTKHGSGGRP 120 NRTTKRGFWK ATGSDRKIVT LSDPKRVIGL KKTLVFYKGR APRGSKTDWI MNEYRLPASC 180 PSHKDIVLCK IYRKATSLKV LEQRAAMEER MKTDHSVTCS DPPSLQPMSP LISGDTTTTF 240 SSKNQELAVL GVTQPVMKKE DEEEETMLSF LYDEATEINK ILESTIINWY GEFESPVVQS 300 QYLGPLFHTL T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-47	50	194	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017233988.1	0.0	PREDICTED: protein FEZ
Swissprot	Q10S65	1e-83	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A166DN27	0.0	A0A166DN27_DAUCS; Uncharacterized protein
STRING	GLYMA11G10230.1	1e-102	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	5e-94	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	DCAR_006295

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]