PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_006004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 237aa MW: 27281.4 Da PI: 6.0496 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.1e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+ +v+++G ++W+ Ia+ g++Rt+k+c++rw +yl DCAR_006004 8 KGPWTEHEDVQLAFYVNLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E+ l v++ ++G++ W++Iar+++ gRt++++k++w++y+ DCAR_006004 61 RGKMTPQEERLVVELQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTYM 106 89********************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.139 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-28 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-13 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.38E-9 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.468 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-15 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.36E-11 | 63 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-22 | 63 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAQDEVRKGP WTEHEDVQLA FYVNLFGDRR WDFIAKVSGL KRTGKSCRLR WVNYLHPGLK 60 RGKMTPQEER LVVELQSKWG NRWSRIARKL PGRTDNEIKN YWRTYMRKEA QEKKKSMPSS 120 PSHSNCSSSI SSSSLDPAAD SKPIPNTMER NFFDTGGLDE GYSMDEIWND IDLSPEENVK 180 PVYGGFNDEI LASPIWDYCP DSLWSTDQED SKTILPTSEP YHSWFGQGSA FFTEHL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-26 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 7e-26 | 5 | 110 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00600 | PBM | Transfer from AT5G59780 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017236827.1 | 1e-178 | PREDICTED: transcription factor MYB59 | ||||
Swissprot | Q4JL84 | 2e-78 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | A0A161Y6W5 | 1e-176 | A0A161Y6W5_DAUCS; Uncharacterized protein | ||||
STRING | VIT_06s0004g04140.t01 | 9e-99 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 5e-75 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_006004 |
Publications ? help Back to Top | |||
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