PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005897
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 304aa    MW: 34416.3 Da    PI: 8.7921
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005897genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-092467344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     rWT+eE +l+ +a +++ ++   +W ++a++++ g+t  ++   +
      DCAR_005897 24 RWTAEENKLFENALAKFDKDtpdRWQKVAAMVP-GKTVADVNRQY 67
                     9********************************.***99987666 PP
2Myb_DNA-binding42.41.6e-13132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r     Rt+ q+ s+ qky
      DCAR_005897 132 PWTEEEHKLFLLGLKKYGKGDWRNISRNYVISRTPTQVASHAQKY 176
                      8*****************************89************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-51767IPR009057Homeodomain-like
PROSITE profilePS5129310.3222073IPR017884SANT domain
SMARTSM007171.8E-92173IPR001005SANT/Myb domain
SuperFamilySSF466893.96E-122378IPR009057Homeodomain-like
CDDcd001673.67E-72470No hitNo description
PfamPF002496.1E-82467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-12123179IPR009057Homeodomain-like
PROSITE profilePS5129419.85125181IPR017930Myb domain
SuperFamilySSF466891.12E-16127181IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-18128180IPR006447Myb domain, plants
SMARTSM007171.9E-12129179IPR001005SANT/Myb domain
CDDcd001671.23E-10132177No hitNo description
PfamPF002496.6E-12132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEVLSPFSYL SSSSWLLEES KSTRWTAEEN KLFENALAKF DKDTPDRWQK VAAMVPGKTV  60
ADVNRQYKVL EDDVSSIEAG LFPIPGYSQS TFTLEWGNST LGFDGFKASF GANGNRSSGN  120
KLSDQERKKG VPWTEEEHKL FLLGLKKYGK GDWRNISRNY VISRTPTQVA SHAQKYFIRQ  180
HSGGKDKRRA SIHDITMVNL NGNQSLSPDN KRPLMDPYKP LCQHENSTQM PGTPYQWNQP  240
NNGAAAMAFN PTNERMFMSS YRLNSHGVKV EDHNFQTESD YESYLGSQDM VFQVQSGLQY  300
RHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1525871173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232748.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-127DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A166DBU90.0A0A166DBU9_DAUCS; Uncharacterized protein
STRINGPOPTR_0009s04730.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.15e-80Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]