PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_005777 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GATA | ||||||||
Protein Properties | Length: 132aa MW: 14497.9 Da PI: 10.2147 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.9 | 2.8e-18 | 21 | 55 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs C+tt TplWR gp+g+k+LCnaCG++y kk++ DCAR_005777 21 CSDCKTTRTPLWRGGPSGPKSLCNACGIKYNKKRR 55 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.5E-14 | 15 | 73 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.426 | 15 | 50 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.9E-13 | 15 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.6E-16 | 19 | 55 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.74E-12 | 20 | 56 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 21 | 46 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.1E-16 | 21 | 55 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MDLQQEITEA ENKDVQTKKS CSDCKTTRTP LWRGGPSGPK SLCNACGIKY NKKRRQLLGL 60 DRSRKHGMKK KQKKSGNEVE RSVKVMRLIA LGREMGLKIS ATAKFGEEEE AAILLMALSC 120 GSLASVLDEM P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017233942.1 | 8e-92 | PREDICTED: GATA transcription factor 15-like | ||||
Swissprot | Q8LG10 | 2e-26 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A166D8V9 | 2e-90 | A0A166D8V9_DAUCS; Uncharacterized protein | ||||
STRING | Migut.D00108.1.p | 1e-39 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8503 | 22 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 5e-20 | GATA transcription factor 23 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_005777 |
Publications ? help Back to Top | |||
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