PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_005288
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 320aa    MW: 36018.9 Da    PI: 7.5936
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_005288genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-17125174155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+G+++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  DCAR_005288 125 SQYRGITFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDQAAIKFRG 174
                  78*******************......55************************997 PP
2AP238.13.8e-12217264152
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f ++ eAa+a+++a+ +
  DCAR_005288 217 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFKSEVEAARAYDKAAIR 264
                  89********.7******5553..2.26**********99*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-15125184IPR016177DNA-binding domain
CDDcd000182.72E-23125184No hitNo description
PfamPF008475.0E-9125174IPR001471AP2/ERF domain
PROSITE profilePS5103217.411126182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17126182IPR001471AP2/ERF domain
SMARTSM003801.1E-30126188IPR001471AP2/ERF domain
CDDcd000187.11E-24217277No hitNo description
SuperFamilySSF541714.64E-16217276IPR016177DNA-binding domain
PfamPF008471.9E-7217264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-15218275IPR001471AP2/ERF domain
SMARTSM003802.2E-29218281IPR001471AP2/ERF domain
PROSITE profilePS5103215.04218275IPR001471AP2/ERF domain
PRINTSPR003674.1E-6219230IPR001471AP2/ERF domain
PRINTSPR003674.1E-6257277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLDLNLSLLN NDTDHNSWMI EENTMDAEDS MTSNSSIRNS SCNSSNAGAV DRSRHFELVT  60
QQLFPVNDNT TCTTVTAQNS WMNSCSSWTP VEPQTHHAGI SFNQAEFQPR VEKKKTRRGP  120
RSRSSQYRGI TFYRRTGRWE SHIWDCGKQV YLGGFDTAHS AARAYDQAAI KFRGVDADIN  180
FNISDYVESM KQMENLSKEE FVLILRRHGT GFSRGSSKYR GVTLHKCGRW EARMGQFLGK  240
KYIYLGLFKS EVEAARAYDK AAIRSNGREA VTNFDPSAYE NEMISETQGG ANGSNLNLNL  300
SMSIPSFVNG LPENENIHQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017231883.10.0PREDICTED: floral homeotic protein APETALA 2 isoform X2
SwissprotB8AXC39e-96AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A166CX480.0A0A166CX48_DAUCS; Uncharacterized protein
STRINGXP_009611308.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.24e-91AP2 family protein