PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004993
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 279aa    MW: 31271.6 Da    PI: 6.6704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004993genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-121156146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W+ eEd +l++ vk+ G++ W++I +   + Rt+k+c++rw +
      DCAR_004993 11 KGPWSVEEDAILLNFVKKNGPREWSSIRSNNLLPRTGKSCRLRWVN 56
                     79*************************9988878**********87 PP
2Myb_DNA-binding39.81.1e-1267106344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++++eE+   +d+ ++ G++ W+ Ia +++ gRt++++k++w
      DCAR_004993  67 KFSAEEERVVLDLQARIGNK-WAQIATHLP-GRTDNDVKNFW 106
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-19558IPR009057Homeodomain-like
PROSITE profilePS5129420.715662IPR017930Myb domain
SuperFamilySSF466891.54E-279106IPR009057Homeodomain-like
SMARTSM007171.6E-111060IPR001005SANT/Myb domain
PfamPF002496.5E-111156IPR001005SANT/Myb domain
CDDcd001674.24E-111358No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1759112IPR009057Homeodomain-like
PROSITE profilePS5129416.05963114IPR017930Myb domain
SMARTSM007175.7E-1064112IPR001005SANT/Myb domain
PfamPF002496.2E-1167106IPR001005SANT/Myb domain
CDDcd001671.21E-867106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MHTRQEQVIK KGPWSVEEDA ILLNFVKKNG PREWSSIRSN NLLPRTGKSC RLRWVNKLRP  60
DLKIGCKFSA EEERVVLDLQ ARIGNKWAQI ATHLPGRTDN DVKNFWSSRQ KKLARIKHSS  120
PGRELKSKGK GIAHKTQNLS AYKSNAIDQV AEGPSSQCSR SCSSETLKMV PIPDPMTSSP  180
LHSLENDKTG LISSTEAQFL IEFPDIPQQL ELPLLPGNNG MELIGDDEAL MMNSGLFLEG  240
PKDYKYCGDE LESPDCFLDD FPDDMFDFIE KMPSQSPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-25910825122MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233058.11e-158PREDICTED: myb-related protein Pp2-like
TrEMBLA0A166CNX30.0A0A166CNX3_DAUCS; Uncharacterized protein
STRINGAquca_002_00029.19e-79(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42072342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-59MYB family protein