PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004706
Common NameC-ABI3
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 663aa    MW: 73864.9 Da    PI: 5.9391
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004706genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.76.1e-20516612295
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                  +kvl++sdv+ +gr+vlpk+ ae+   +++ + ++++++ed  ++++W+++++y  ++ks++yvl+ ++ eFvk+ngL+egDf+v++  ++ ++++++
  DCAR_004706 516 QKVLKQSDVGCLGRIVLPKREAETQlpQLEDRDGIQIVMEDiGTSKVWNLRYRYwpNNKSRMYVLE-NTGEFVKENGLQEGDFIVIY--SDiKCGKYL 610
                  79********************999**8888999*******7778*********89999999**99.********************..677899887 PP

                  EE CS
           B3  94 vk 95 
                  ++
  DCAR_004706 611 IR 612
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-25509618IPR015300DNA-binding pseudobarrel domain
CDDcd100153.52E-30513614No hitNo description
SuperFamilySSF1019362.49E-20514608IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.56515617IPR003340B3 DNA binding domain
SMARTSM010195.2E-17515617IPR003340B3 DNA binding domain
PfamPF023622.8E-15516611IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MKGEHGDVDE VMEAFGEEIW RGSEESSIFC DVFPALPDFP CMSSTSSSSS NPALNRQFVS  60
SSASSGCSAS SSAVVKSDGN LRSVKYEVDV SPSALSSTDC MGVMEEFGYM DLIEDGNEGW  120
DPSSIFRNDD ETNVGEELID QGGFKEEERV EEEMGLDELG VMFFEWLKTN KEHISAEDMK  180
NIRFKKSTIE CAYKRMGSSK EGKKQLLKLI LEWVEQYQLQ KKRSREAAEA AAEAASSHQV  240
PCLYQEPNPN PNPNSNFVNF MPTPGANACM WIPIPQSSSI DPPAVVPSGP APPAVAYYQP  300
YPFVGGANVG PVNCQPYPPQ MPQPEYQMLE SPQLWPRSQF VLAPQYNSFP DQNGNFVPIA  360
PHPVAPVYGE QYPSQVYNGS NSDRVVRLAP SATKEARQKR MARKRWGSFH RNQPHQNQIQ  420
KTDSPEQISE KKLGAENFTN SINGQSSPVN WLYWPAVGPP KLAQPPMAAQ SQQPDQYQQG  480
YPTFLPVKAQ SNRRPAQQQQ KKQGFKGEKN LKFLLQKVLK QSDVGCLGRI VLPKREAETQ  540
LPQLEDRDGI QIVMEDIGTS KVWNLRYRYW PNNKSRMYVL ENTGEFVKEN GLQEGDFIVI  600
YSDIKCGKYL IRGVKVRQPV KGKLEAKVTR KHHSNSGAGT DIPQNHSNSG AGTDIPPYTP  660
SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-345116151105B3 domain-containing transcription factor FUS3
6j9b_D1e-345116151105B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0055580.0AB005558.1 Daucus carota mRNA for C-ABI3 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233965.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X2
TrEMBLA0A166JDK90.0A0A166JDK9_DAUCS; Uncharacterized protein
STRINGcassava4.1_021232m1e-148(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42702339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.16e-73B3 family protein