PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004664
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 636aa    MW: 70609.8 Da    PI: 9.3309
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004664genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.12.3e-194689448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT+eEd +l+d+vk++ g++Wk+Ia+ ++ gRt+ qc +rwqk+l
      DCAR_004664 46 WTEEEDNRLADVVKKFNGRNWKKIAESLP-GRTDVQCLHRWQKVL 89
                     *****************************.************986 PP
2Myb_DNA-binding61.51.7e-1995141148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEd++++++v+++G++ W++Ia++++ gR +kqc++rw+++l
      DCAR_004664  95 KGPWKKEEDDRIIQLVQKYGSRKWSAIAKYLP-GRIGKQCRERWHNHL 141
                      79******************************.*************97 PP
3Myb_DNA-binding44.63.4e-14147189145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++ E+ +l  +++ +G++ W+ Ia+ ++ gRt++ +k++w+
      DCAR_004664 147 KEAWSEREEAILSYYHQIYGNK-WAEIAKFLP-GRTDNAIKNHWN 189
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0193589IPR017930Myb domain
SMARTSM007171.6E-144291IPR001005SANT/Myb domain
SuperFamilySSF466891.58E-1745108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-2445106IPR009057Homeodomain-like
PfamPF002495.9E-174689IPR001005SANT/Myb domain
CDDcd001675.41E-144689No hitNo description
PROSITE profilePS5129430.06390145IPR017930Myb domain
SuperFamilySSF466891.95E-3092188IPR009057Homeodomain-like
SMARTSM007171.9E-1794143IPR001005SANT/Myb domain
PfamPF002491.0E-1895141IPR001005SANT/Myb domain
CDDcd001673.05E-1597141No hitNo description
Gene3DG3DSA:1.10.10.602.0E-26107147IPR009057Homeodomain-like
PROSITE profilePS5129416.757146196IPR017930Myb domain
SMARTSM007174.1E-14146194IPR001005SANT/Myb domain
PfamPF002493.7E-12147189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-20148196IPR009057Homeodomain-like
CDDcd001674.81E-11149189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MVKKENEGVI VKKEIDFVSS SSISDSSCDT GYKRNKVAKR SSQAGWTEEE DNRLADVVKK  60
FNGRNWKKIA ESLPGRTDVQ CLHRWQKVLN PELFKGPWKK EEDDRIIQLV QKYGSRKWSA  120
IAKYLPGRIG KQCRERWHNH LDPAIKKEAW SEREEAILSY YHQIYGNKWA EIAKFLPGRT  180
DNAIKNHWNC SSKKKLDNLD LNLPLQSPLS DDLSSEANLE SVKIPAVQLG VGKAMSTYQI  240
AGPVRKVSDM CSTDLTLGNA YTCESWLGSK SSRSQKYPEQ EAVNQPLSRV QFRGNSSINN  300
GKMDLPWKRN FHTSNVLASF LSSSSSITEE ASGGKTNLAP QGVLHPLTSG GMFASCKRPR  360
NGDVAIFNSE HKSILSDKPW MSCSPGSIDV ETPPQLDKKL CNAPYKLVHH FTPSKMVENC  420
ERPRSDGSNI INLRRECVQG NSLLNLTPGS SQYSNYIGKG NTVLQTPKLD AKHYGSFSDG  480
PPYVKDIVAP VRTGEYSSVD DITKANSQSF CSTPSLAQSI VCTSSPESIL RNSAMKYEHT  540
PSIIRKSRPK EGGSCSPVHK ISMTCESRAA NPIDLMDDKT TLHSQLHRSA LSVAGKPLER  600
RLEYAFDREW DPLAVRCSTP VSAPSEAVLG ARLQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-67461969159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-67461969159MYB PROTO-ONCOGENE PROTEIN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233170.10.0PREDICTED: myb-related protein B-like isoform X1
TrEMBLA0A166JC610.0A0A166JC61_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.21e-72myb domain protein 3r-4