PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004610
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 295aa    MW: 32979.4 Da    PI: 4.9976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004610genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.2e-28136194259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++prsYYrC+s+ gC ++k+ve s + p ++++tY+ eHnh+
  DCAR_004610 136 SDLWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVEESCSSPGTFIMTYSAEHNHS 194
                  799************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-29121196IPR003657WRKY domain
PROSITE profilePS5081131.445130196IPR003657WRKY domain
SuperFamilySSF1182902.22E-24131196IPR003657WRKY domain
SMARTSM007743.4E-32135195IPR003657WRKY domain
PfamPF031062.2E-23137193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEEDWGLEAI VRGCSHDQYT AINGLLDFNF QDDLFYDFPD FQGDEISTDN SGFVNELDDF  60
CKPFYDPASQ IFVPEQTDSP VNEVKFEQEE IKVVDQKEAS AVAAASPKVA THATKYKRKN  120
QQKRVVVQVT AEGLSSDLWA WRKYGQKPIK GSPYPRSYYR CSSSKGCLAR KQVEESCSSP  180
GTFIMTYSAE HNHSQPTRRS SLAGTNRQKF SALKRTSSGE SCVSSTATPK EHSKFSSSST  240
HVEVVRALKK IKHEKNDTII DDDHEFVIPD SILTDEFFAG FDDDLDGLVS NSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-17127196877Probable WRKY transcription factor 4
2lex_A3e-17127196877Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017216572.10.0PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A166JA630.0A0A166JA63_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.13e-30WRKY family protein