PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004466
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 345aa    MW: 38095.4 Da    PI: 6.4355
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004466genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.7e-18238272135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  DCAR_004466 238 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 272
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-8119328IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.149232268IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-17232282IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14234269IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.38E-15234296No hitNo description
CDDcd002028.87E-15237284No hitNo description
PfamPF003201.3E-15238272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440238263IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
METPHEFYQA SAAGYYNNVQ QFAPEKRNSD IKPGDHFVIE DLLDFPSDDL LVTDAAFDNV  60
TGTSTDSSAL TVVDSCNSSF SGNEARFGGS LADHAQFSNE LCVPYDDMAE LEWLSNFVEE  120
SFSSEDLQKL QLISGMKAGG DASENQQYQP ETNRNNPIFR SEVSVPGKAR SKRSRAAPCN  180
WTSRLLVLPP TNTPAMSSES TESDIAAMGK KMGKASITGK KKEVFDNGGG SGGDGRKCLH  240
CATDKTPQWR TGPMGPKTLC NACGVRYKSG RLVPEYRPAA SPTFMLTKHS NSHRKVLELR  300
RQKEMQRAQH HHQQFIHQGM MFDVSNGEDF LIHQQIGPDY RQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017218709.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697812e-97GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A166J5G50.0A0A166J5G5_DAUCS; GATA transcription factor
STRINGXP_010249552.11e-166(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-98GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]