PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | GATA | ||||||||
Protein Properties | Length: 184aa MW: 20233.8 Da PI: 10.1485 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.7e-18 | 58 | 91 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt TplWR gp+g+k+LCnaCG++ rk + DCAR_004426 58 CSDCNTTRTPLWRGGPRGPKSLCNACGIRRRKAR 91 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.8E-17 | 52 | 103 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.28E-13 | 55 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.1E-15 | 56 | 91 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 12.215 | 56 | 88 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 8.35E-12 | 57 | 89 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 58 | 83 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.9E-15 | 58 | 91 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MVDHENISTS TEGDGSMRWM SSKMRVKRKI LPSSNNHSDQ INFSDHGNSS TDVVVRVCSD 60 CNTTRTPLWR GGPRGPKSLC NACGIRRRKA RKAIALAAHN SIESVSKMDQ HSSTRPSKFH 120 KGKKLHTTYH DVTHSRQTTG NSKLSFEDFA MSLVNKKSAE LFPGDEEEAA ILLMTLSCSL 180 ISG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221410.1 | 1e-134 | PREDICTED: putative GATA transcription factor 22 | ||||
TrEMBL | A0A166J3Y7 | 1e-133 | A0A166J3Y7_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3097 | 22 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26150.1 | 1e-26 | cytokinin-responsive gata factor 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004426 |