PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 357aa MW: 38399.2 Da PI: 7.0207 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.3 | 3.5e-10 | 96 | 120 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaH+ DCAR_004290 96 FKTKLCCKFRA-GTCPYVTNCNFAHS 120 69*********.*************8 PP | |||||||
2 | zf-CCCH | 17.9 | 5.5e-06 | 173 | 194 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+ C+yG++C+F H+ DCAR_004290 173 HCKKFFTEEGCPYGENCSFLHD 194 599999999************7 PP | |||||||
3 | zf-CCCH | 43.1 | 7e-14 | 238 | 263 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +tG+C++G++C+FaHg DCAR_004290 238 WKTRICNKWEQTGFCPFGNKCHFAHG 263 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-14 | 93 | 128 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-8 | 93 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.003 | 95 | 121 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.131 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 168 | 196 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.52 | 168 | 195 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-8 | 169 | 195 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 169 | 195 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-17 | 233 | 267 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-10 | 234 | 268 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.403 | 237 | 265 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-9 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.2E-11 | 238 | 263 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDYGRDSSGD VVHIIPGNHG SGGGNWGSGS TDQAVWATEE DYGAWNREAS VDGNSNLDGR 60 QSQTRSGSEP PNKKSRILQP DVQSTNRSKA IGKMFFKTKL CCKFRAGTCP YVTNCNFAHS 120 IEELRRPPPN WQEIVAAHEE EQTANEPREE FQIPTLGSTA FPVEPQRSSK GRHCKKFFTE 180 EGCPYGENCS FLHDDQSRTR ESVAISLGPG SGGGYGGSAN AGAGSGGVSP STLKPSNWKT 240 RICNKWEQTG FCPFGNKCHF AHGAAELHRY GGGLVDSDGK EFSSPSDTKQ GTGLSKSPGD 300 TLVASVPSVP YADGYHMGGS SQRVSNMPRA GPILNQKWKG PNKISLIYGD WIEDLE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251961.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 1e-121 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A166IYN4 | 0.0 | A0A166IYN4_DAUCS; Uncharacterized protein | ||||
STRING | XP_010096556.1 | 1e-158 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3729 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-118 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004290 |