PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004166
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 430aa    MW: 47716.9 Da    PI: 5.2639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004166genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.80.000223273591754
                  HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++   L++l+ +      +K + a++L +A+eYIk L
  DCAR_004166 327 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKLL 359
                  55666677777776.....8****************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.769310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-10320371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-4320363No hitNo description
Gene3DG3DSA:4.10.280.102.4E-6324364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MADEFQAGIC AENWWMNPSQ SNFGSSVCSP IINNMDLISW PADLDIKARA SDDQSGSANS  60
EGSIVFEDIR RPMDQDGSLL ALNSNLEMIN KNLSSSITAN WNPTLLDHDN KSNGYNYQTN  120
LLDSLNSSSN YQQDAGNLSH IKKDWSPEKF STFNEISSLE SYKGQPADQV FSVSSSYGYT  180
SSLMQTLFHT DSDQDSVFGN QPMEYAALSN ICPEKLNEFT SSNNSLLKPS PVVLPKQPLN  240
HLNLPNNSAW NTSNDDSQFA SGQSQFFSPK FADELNCPSL SVKSDNKRNR DMSTAVKINS  300
TEPVFKRQRM QTPSPLPTFK VRKEKLGDRV TALQQLVSPF GKTDTASVLH EAIEYIKLLH  360
DQVTVLITPY IKGGSPIPHD HEQTRRDPKG RRQELRSRGL CLVPISSTFP VASETTADFW  420
TPTFGGSFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017239112.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLA0A166IUN50.0A0A166IUN5_DAUCS; Uncharacterized protein
STRINGVIT_00s0274g00070.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-52bHLH family protein