PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004127
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 551aa    MW: 61871 Da    PI: 10.6649
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004127genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.3e-081146137
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     r++W t+E++ l  av ++G+++W+ Ia+++   Rt 
      DCAR_004127 11 RLKWGTWEELVLGSAVLRHGNKDWNVIASELR-VRTV 46
                     89****************************99.7876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.9E-51145IPR001005SANT/Myb domain
SMARTSM002971.5E-17274382IPR001487Bromodomain
SuperFamilySSF473701.1E-18288381IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.4E-15289379IPR001487Bromodomain
PROSITE profilePS5001411.864293363IPR001487Bromodomain
PfamPF004394.9E-12295366IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MREGKIAVGP RLKWGTWEEL VLGSAVLRHG NKDWNVIASE LRVRTVYPFS FTPECDLTVN  60
KFQACKAKYK DLRRRYSGCK AWFEELRRCR MKELKLELKK TAESIGSLEA KLKRLKTSKK  120
EDCEVDYDTS RTESPEPVPK TELIDYSAKE TSKDSLSAGS YTQDFRSSFS PDCRITELES  180
TPEMETRPKR LESDEHETLM SIKIEGLMNE KVSTVRKRRG KRKRKDCNME IREGSIAESE  240
HFHQANVQTI SSWKETSTSG CGQIVKSSSV DGHNKDLFRG TSGGLMGFFS VVAESKHALV  300
FKRRLDGQKR ARYKRIIRQH MDLDTIKSRI DSGTIKSIKE LFRDLLLLAN NALIFYSKRT  360
REYKSAFSLR ELLMKEIRQQ CRDSLNISSS IVHFSPMCST PVRPRSFRPR PEKSKFSAKP  420
TETAGGVAGT LLGNKRVGDA SPSTPSLALQ SSVMARKSPG APQGYLKLRH ADTSSTPLGS  480
LTMAKKHVGI SVGSKKPNNA DSNLPKQSMP VAKKGVSPQG KIVRPNSNNH RSKTVAMKER  540
KRAGQKITGL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217225RRGKRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250324.10.0PREDICTED: uncharacterized protein LOC108220906
TrEMBLA0A166ITI80.0A0A166ITI8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.12e-15DNA-binding bromodomain-containing protein