PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_004039 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ARF | ||||||||
Protein Properties | Length: 717aa MW: 78677.2 Da PI: 7.7365 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.2 | 7.8e-24 | 141 | 242 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L gD v+F + ++el DCAR_004039 141 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVCGDAVLFLR--GGDGEL 235 99****************************963.3445679************************************************3..378999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ DCAR_004039 236 RLGIRRA 242 ***9986 PP | |||||||
2 | Auxin_resp | 111 | 1.2e-36 | 265 | 346 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a+s+ksvF+ +YnPr+s+s+Fv++++k++k+l +++s+G Rfkm++eted+ err++G++vg+ d+dp+rWp+SkWr+L DCAR_004039 265 VVNAVSMKSVFNLCYNPRSSSSDFVIPFSKFSKSLANSFSPGIRFKMRIETEDATERRCTGLIVGTGDVDPLRWPGSKWRCL 346 6899*****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.11E-42 | 137 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-40 | 138 | 246 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.62E-23 | 139 | 241 | No hit | No description |
PROSITE profile | PS50863 | 13.098 | 141 | 243 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-22 | 141 | 243 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-22 | 141 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-31 | 266 | 346 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MCGMIDLNTV NEDDADTTPS EFDSAPVKSP AVCLELWHAC AGPLISLPKK GSCVVYLPQG 60 HLEYVVCDYG DDVASRLPPH VFCRVVDVKL HAEAATDEVF AQVSLIPDSQ IELNWKEGKS 120 EVVVEDEDVE IAAKAMTPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL DYKQQRPSQE 180 LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV CGDAVLFLRG GDGELRLGIR 240 RAAQVKSGAK VAVAYNEHMN DIASVVNAVS MKSVFNLCYN PRSSSSDFVI PFSKFSKSLA 300 NSFSPGIRFK MRIETEDATE RRCTGLIVGT GDVDPLRWPG SKWRCLMVRW DDMEATRHNR 360 VSPWEIELSS SVPGASGLLS PSMKRSRIGF TTQPDFPISR ANVFVLLTDG TGISDFRESS 420 RFQKVLQGQE ILGFHASFDG VDARKNHPPD PRGCFPGSMN WDSAVGNGVR SVMGSSEISY 480 DGVNFSESLR LNKVLQGQEI LSKRPYGGCP TVNQMLEHND PRFIEGARAV SGGTEWPSVM 540 QGYSTCMRPS APLVRKSPMS SVPVFQQPSN PDPKCGAVAS RGNLTSSSPY GRNRFEMESQ 600 QNLASSGLLN SHKQLGSFNL PLETQASNMG SSNLVSSCKS SCRLFGFLLT EESPAISKES 660 NPSRIQSAYV HKAPHHPRGD EQFNSKPSSM TKIVGGSCTK AKDLYNVRDM LLDIAM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-107 | 27 | 367 | 14 | 353 | Auxin response factor 1 |
4ldw_A | 1e-107 | 27 | 367 | 14 | 353 | Auxin response factor 1 |
4ldw_B | 1e-107 | 27 | 367 | 14 | 353 | Auxin response factor 1 |
4ldy_A | 1e-107 | 27 | 367 | 14 | 353 | Auxin response factor 1 |
4ldy_B | 1e-107 | 27 | 367 | 14 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017229595.1 | 0.0 | PREDICTED: auxin response factor 15 | ||||
Refseq | XP_017229596.1 | 0.0 | PREDICTED: auxin response factor 15 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A162B8M5 | 0.0 | A0A162B8M5_DAUCS; Auxin response factor | ||||
STRING | PGSC0003DMT400081282 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_004039 |