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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | DCAR_003980 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 173aa MW: 18653.8 Da PI: 9.6712 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 18.3 | 6.6e-06 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C +C+k+Fs+ + L H++ H
DCAR_003980 42 YPCRYCDKTFSTFMALGGHQNGH 64
99*****************9987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 5.38E-6 | 39 | 68 | No hit | No description |
| PROSITE profile | PS50157 | 10.034 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 173 aa Download sequence Send to blast |
MDAQKVQHSP SSNSPPRRNE IDAPALTQIP KNSPEPKTAK TYPCRYCDKT FSTFMALGGH 60 QNGHKRARGL HAGRAQTPLY RPYPATSRPN SGSDSMDNKK SNLSMESSTS STSTWRLLQE 120 FYAKFSVKSA PPSLNCVPPA ATALSPGVSS TPKTSEEVKE EDASGLDLDL KL* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_017253791.1 | 1e-125 | PREDICTED: zinc finger protein GIS-like | ||||
| TrEMBL | A0A166INQ9 | 1e-123 | A0A166INQ9_DAUCS; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G24625.1 | 4e-09 | zinc finger protein 7 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | DCAR_003980 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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