PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003839
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 307aa    MW: 34723.4 Da    PI: 5.8297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003839genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.22.3e-1612941098
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EE.ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrk.ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  +++  l +p  f+e+++gk   + +l l+ e  r+++v++  +k   gr+++ +GW +Fv ++gL+ gDfvvF+l+++s+f   v+v++
  DCAR_003839 12 DFSR-KLLIPPAFVERMEGK--LGSELALKYECERVYTVQV--EKlEEGRFFFVNGWPQFVADHGLDYGDFVVFRLVQDSTF--QVTVYD 94
                 4444.59**********988..6679***************..551445599**************************9999..776665 PP
2B350.92.8e-162152841689
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  + lp  f++e g+  +e  +++l+d++g++W vk+   + +++  lt GW +   a++Lk gD+++F++++r++
  DCAR_003839 215 IPLPLLFVRESGLADKE--QIKLRDPDGKKWLVKV--INEGKKAALTVGWTRLFVAHRLKRGDTCIFTYVRREG 284
                  56888899999877555..6***************..78888889************************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.689296IPR003340B3 DNA binding domain
SuperFamilySSF1019361.88E-21398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-20398IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-17394No hitNo description
SMARTSM010194.3E-13596IPR003340B3 DNA binding domain
PfamPF023621.4E-131292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-16196283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-17196281IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.829200297IPR003340B3 DNA binding domain
CDDcd100179.71E-14201284No hitNo description
SMARTSM010199.3E-9203288IPR003340B3 DNA binding domain
PfamPF023621.7E-13214284IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDPSFFKPLV GDFSRKLLIP PAFVERMEGK LGSELALKYE CERVYTVQVE KLEEGRFFFV  60
NGWPQFVADH GLDYGDFVVF RLVQDSTFQV TVYDPSMCEK DCCDSHRNKN GDRTAGKVIK  120
EEARTSLDQN TSLDSLSRXL PLSGSLPLPL PLSLALSLSI SYQMFHYQGS RVDLTEDDEE  180
TDAKMEIDDE PKEATSNDDA PSFRLLLTEA NKIWIPLPLL FVRESGLADK EQIKLRDPDG  240
KKWLVKVINE GKKAALTVGW TRLFVAHRLK RGDTCIFTYV RREGSSGIIQ VDMKRGRGRP  300
PKKESS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221080.10.0PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLA0A162B8170.0A0A162B817_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-15B3 family protein