PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003717
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 285aa    MW: 32121 Da    PI: 7.7833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003717genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ed  l  +v+++G g+W+  +++ g++R++k+c++rw++yl
      DCAR_003717 14 RGAWTVSEDTVLTAYVQEHGEGNWRNLPSRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding513.4e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
      DCAR_003717  67 RGNISEDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNST 111
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.598961IPR017930Myb domain
SuperFamilySSF466896.12E-2912108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002495.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221568IPR009057Homeodomain-like
CDDcd001671.39E-81661No hitNo description
PROSITE profilePS5129425.76662116IPR017930Myb domain
SMARTSM007171.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.6E-1467111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2469115IPR009057Homeodomain-like
CDDcd001679.68E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGRRPCCSKE GLNRGAWTVS EDTVLTAYVQ EHGEGNWRNL PSRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SEDEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS TLSKKAQGML  120
RKSSASSKLC SDRKSIVKNP KTKLERSKQP VSPKSAVRFN SLRHIKVVPA MSSPSSPSNI  180
SAFYNLQDLQ ELPKDWTNTA HKLDNSEVEA LTSCHEENAM EDYGCKNDLN EGGFDHSLSV  240
SDAMNQDWTT NDFLEGNAII DLDSLFSFLN DEEWPFVNDS SINV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0341304e-33AF034130.1 Gossypium hirsutum MYB-like DNA-binding domain protein (MYB2) mRNA, complete cds.
GenBankAY1155074e-33AY115507.1 Gossypium hirsutum myb-like transcription factor 2 (MYB2) gene, partial cds.
GenBankAY1155084e-33AY115508.1 Gossypium raimondii myb-like transcription factor 2 (MYB2) gene, partial cds.
GenBankAY1155104e-33AY115510.1 Gossypioides kirkii myb-like transcription factor 2 (MYB2) gene, partial cds.
GenBankEU2494124e-33EU249412.1 Gossypium hirsutum strain HS46 myb-like transcription factor 2 (MYB2) gene, partial cds.
GenBankEU2494134e-33EU249413.1 Gossypium hirsutum strain MARCABUCAG8US-1-88 myb-like transcription factor 2 (MYB2) gene, partial cds.
GenBankEU2494154e-33EU249415.1 Gossypium mustelinum myb-like transcription factor 2 (MYB2) gene, partial cds.
GenBankEU2494164e-33EU249416.1 Gossypium tomentosum myb-like transcription factor 2 (MYB2) gene, partial cds.
GenBankJQ8685584e-33JQ868558.1 Gossypium thurberi isolate D1 MYB2 mRNA, complete cds.
GenBankJQ8685594e-33JQ868559.1 Gossypium raimondii isolate D5 MYB2 mRNA, complete cds.
GenBankJQ8685604e-33JQ868560.1 Gossypium hirsutum isolate TM1 note D genome MYB2 mRNA, complete cds.
GenBankJQ8685614e-33JQ868561.1 Gossypium hirsutum isolate N1 note D genome MYB2 mRNA, complete cds.
GenBankJQ8903284e-33JQ890328.1 Gossypium thurberi isolate D1 MYB2 gene, complete cds.
GenBankJQ8903294e-33JQ890329.1 Gossypium raimondii isolate D5 MYB2 gene, complete cds.
GenBankJQ8903304e-33JQ890330.1 Gossypium hirsutum isolate TM1 note D genome MYB2 gene, complete cds.
GenBankJQ8903314e-33JQ890331.1 Gossypium hirsutum isolate N1 note D genome MYB2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017235179.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A166IEX50.0A0A166IEX5_DAUCS; Uncharacterized protein
STRINGVIT_04s0008g01800.t019e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.13e-60myb domain protein 12