PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003659
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bZIP
Protein Properties Length: 171aa    MW: 19129.4 Da    PI: 6.3511
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003659genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.51.1e-113485556
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                 ++ +r+++NRe+ArrsR RK++ ++ L     +L++eN+     ++  +++ 
  DCAR_003659 34 RKRKRMISNRESARRSRMRKQKHLDDLMAQLNQLKTENEHIMTSMSVTTQHF 85
                 6789**********************************98776666555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-183094IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5763295IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-123486No hitNo description
Gene3DG3DSA:1.20.5.1704.7E-113478No hitNo description
PfamPF001704.2E-93479IPR004827Basic-leucine zipper domain
CDDcd147021.57E-173585No hitNo description
PROSITE patternPS0003603752IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MTSSSGTATT TSSGSSLLQN SGSEKDLQVL MDERKRKRMI SNRESARRSR MRKQKHLDDL  60
MAQLNQLKTE NEHIMTSMSV TTQHFLNIES ENSVLAAQVA ELSNRLQSLN EIISFMDARN  120
ANLGSVQDHA YSVFGDEPSC DNMFINMNMP MNYLYANQHP IMASADGLQY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13354RKRKRMISNRESARRSRMRKQK
24653RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017232093.11e-123PREDICTED: bZIP transcription factor 53
SwissprotC0Z2L52e-44BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A162B7J71e-122A0A162B7J7_DAUCS; Uncharacterized protein
STRINGXP_004289640.13e-59(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-45G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]