PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_003455 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 241aa MW: 26992.1 Da PI: 7.2331 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 100.6 | 1.1e-31 | 61 | 115 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhA+ lGghavDGC+Efmp+ g++gt +alkCaAC+CHRnFHR+e + DCAR_003455 61 PCRYRECLKNHAVGLGGHAVDGCCEFMPA-GDDGTLDALKCAACNCHRNFHRKEIN 115 589*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-22 | 63 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-28 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.6E-28 | 63 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.856 | 64 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-28 | 166 | 237 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-16 | 173 | 236 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-26 | 179 | 235 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MEFEEQPEDA DQATHELPHS HPPPSYDSVT LNNNNNGNNS AYQARVSPLM QLDSPASGRK 60 PCRYRECLKN HAVGLGGHAV DGCCEFMPAG DDGTLDALKC AACNCHRNFH RKEINPNFPL 120 SPHLPQHPHF VPYYRSPSGY LHVATPTSQR PLALPSSSGG GMSSQEQEEN MTSSGGLLRK 180 RHRTKFTPEQ KEKMMSLAER LGWRIQREDD EAVKCFCEET GVSRHVLKVW MHNNKHVHSW 240 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-28 | 178 | 236 | 16 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016740745.1 | 9e-85 | PREDICTED: zinc-finger homeodomain protein 2-like isoform X1 | ||||
TrEMBL | A0A166I6G4 | 0.0 | A0A166I6G4_DAUCS; Uncharacterized protein | ||||
STRING | Gorai.003G042700.1 | 3e-83 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-66 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_003455 |