PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_003208
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 360aa    MW: 40284.6 Da    PI: 7.8345
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_003208genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH216.1e-07326226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 k++lC+f++  G C  G++C F+H+
  DCAR_003208  3 KRVLCKFYSH-GACLKGENCEFSHD 26
                 99****9999.*************5 PP
2zf-CCCH24.45.2e-083454526
                 --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                  C f+++ G C+yG+rC++ H+
  DCAR_003208 34 VCTFYQK-GVCSYGSRCRYEHV 54
                 5******.***********997 PP
3zf-CCCH17.57.2e-06143162626
                  -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                  C+ fa+ G C++G++C+ +Hg
  DCAR_003208 143 CS-FAAAGNCPRGEKCPHIHG 162
                  66.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-5127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2492956IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-43155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-53253IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-53454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.38137164IPR000571Zinc finger, CCCH-type
SMARTSM003560.016138163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4142162IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.3E-12194270No hitNo description
Gene3DG3DSA:3.30.40.101.8E-9199265IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001627.83E-4205265No hitNo description
PfamPF000977.4E-6206263IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001842.8E-6206263IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.076206264IPR001841Zinc finger, RING-type
PROSITE patternPS005180230239IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.082293321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319293322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSKRVLCKFY SHGACLKGEN CEFSHDWKDP ANNVCTFYQK GVCSYGSRCR YEHVKVSRSQ  60
PCATSSSAVT LQYSGSFPAT NSSRNAASGR TAAEGVNREL LDSSRSFVPA TNPAWNEISA  120
LPQSLDDTYT RESGTNPAEL VMCSFAAAGN CPRGEKCPHI HGDLCPTCGK HCLHPFRLEE  180
REEHSRMCEK RHIHLEALKR SQEIECCVCL ERVLSKPTAA ERKFGLLSEC DHPFCVSCIR  240
NWRSSSPISG MDVNSALRAC PICRKLSYFV IPSVIWYSTK EEKQEIVDSY KSKLRSIDCK  300
HFDFGEGSCP FGTSCFYKHA YRDGHLEEVD LRHLGADDGM TVIAKDIRLS DFLNSLRLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017230622.10.0PREDICTED: zinc finger CCCH domain-containing protein 69-like
SwissprotE0X9N41e-174C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A166HYQ80.0A0A166HYQ8_DAUCS; Uncharacterized protein
STRINGcassava4.1_010375m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-160C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]