PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_002986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 26327.3 Da PI: 4.4623 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 8.9e-19 | 21 | 73 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft++q++ Le+ Fe + ++ +++ + Ak+lgL rqV +WFqN+Ra++k DCAR_002986 21 KRRFTDDQIKSLETIFECDTKLEPRKKLQVAKELGLHPRQVAIWFQNKRARYK 73 679*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 115.6 | 2.9e-37 | 20 | 110 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 krr++++q+k+LE+ Fe ++kLep++K ++a+eLgl+prqva+WFqn+RAR+k+kqlEk+y++L+++yd+l+++ + L+ke+++L + + DCAR_002986 20 SKRRFTDDQIKSLETIFECDTKLEPRKKLQVAKELGLHPRQVAIWFQNKRARYKSKQLEKEYSVLQAKYDNLATQFDILKKEKQSLVLQFQ 110 69************************************************************************************87766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.18E-17 | 8 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-16 | 17 | 79 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.3E-16 | 20 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.79E-14 | 21 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 21 | 82 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.9E-5 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.9E-5 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.2E-14 | 75 | 115 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MADPECYDTY ETLSRKKSNS KRRFTDDQIK SLETIFECDT KLEPRKKLQV AKELGLHPRQ 60 VAIWFQNKRA RYKSKQLEKE YSVLQAKYDN LATQFDILKK EKQSLVLQFQ KLHDMVGKSG 120 EERQEMYKNI SIGKSDDDDD NECQMQPDLL SCGSEHGLGL LSDDYNIMKA EYFKLDEEET 180 ERLNMVEVDL GDGSLTSTED WENLESSVIF DQPSSSDSQW WDFWA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017241533.1 | 1e-166 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A166HSB4 | 1e-165 | A0A166HSB4_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0002s17680.1 | 2e-71 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61890.1 | 1e-50 | homeobox 12 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_002986 |