PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_002494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | AP2 | ||||||||
Protein Properties | Length: 476aa MW: 53021.7 Da PI: 6.7918 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 8.2e-17 | 130 | 179 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g DCAR_002494 130 SQYRGVTFYRRTGRWESHIWD------TgKQVYLGGFDTAHAAARAYDRAAIKFRG 179 78*******************......44*************************98 PP | |||||||
2 | AP2 | 41 | 4.9e-13 | 222 | 272 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g DCAR_002494 222 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 272 79********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.2E-10 | 130 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.15E-12 | 130 | 189 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-16 | 130 | 188 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-18 | 131 | 187 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.07 | 131 | 187 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-30 | 131 | 193 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.3E-9 | 222 | 272 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.48E-25 | 222 | 282 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-16 | 222 | 281 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-15 | 223 | 280 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.738 | 223 | 280 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-31 | 223 | 286 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-6 | 224 | 235 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-6 | 262 | 282 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MLDLNLNYFP SSSFHDPAES QHLHLFGMQM NEHSGTSNSS VVNVETSSNA GDEEYSNQPY 60 HEHCFDILKS GDDQVDEHEE SYNQGSVVKP RFTTKELFPV RGSPRRMDPL VQQQVQQVKR 120 SRRGPRSKSS QYRGVTFYRR TGRWESHIWD TGKQVYLGGF DTAHAAARAY DRAAIKFRGA 180 NADINFSISD YGEDLQKMKN VTKEEFVQIL RRQSTGFSRG SSRYRGVTLH KCGRWEARMG 240 QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGRDAVTNFE PSTYDNDFCS EAETGVTCST 300 LCFTTGSGQS LDLNLEMSPT DFADGAKGTD DFGSLSFQNH LKDIPDVRES RHKVIQIEES 360 SPSAIMGTPL PLGQVYTPGL PSFRSGVNSS LLPVYEGRAM DKIIEVDLQP HWAWSNQGSY 420 AEPTSVPLFS TAASSGFVTS RATAASAGFY FISPPHRHTS KPCQIAANTN SVFYY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017221360.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like | ||||
Swissprot | B8AMA9 | 8e-93 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | B8AXC3 | 4e-92 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | A0A169WSM8 | 0.0 | A0A169WSM8_DAUCS; Uncharacterized protein | ||||
STRING | XP_009606014.1 | 1e-139 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-88 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_002494 |