PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_002356
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 268aa    MW: 28881.7 Da    PI: 5.1002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_002356genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10116160554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L++l+P++      K +Ka++L +  +Y+k L
  DCAR_002356 116 HSIAERLRRERIAERMRALQDLVPSC-----NKTDKAAMLDEILDYVKFL 160
                  99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.59E-12109165No hitNo description
SuperFamilySSF474593.79E-16109170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.602111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-16113171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7116160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MANNPAEGYP DDFLEQILAI PAYSGLAGND GSSSDNSQLT AAGQLGSGAG VIQQPFFPLG  60
LSLDNGQHPQ SIRHTVPQIH QAFQGQTTTS TAVTVPHPPN MRPRVRARRG QATDPHSIAE  120
RLRRERIAER MRALQDLVPS CNKTDKAAML DEILDYVKFL RLQVKVLSMS RLGGAGAVAQ  180
LVADIPLQSV EGGITETGRN QPIWENWSND DTEQEVAKLM EEDVGAAMQF LQSKALCIMP  240
ISLAALIYPT NQPDISTLVK PEPPAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120125RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250860.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227687e-83UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A166H4770.0A0A166H477_DAUCS; Uncharacterized protein
STRINGSolyc09g083220.2.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.29e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]